Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4226

Experiment: KB with Curcumin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4225 and Psyr_4226 are separated by 10 nucleotidesPsyr_4226 and Psyr_4227 are separated by 164 nucleotides Psyr_4225: Psyr_4225 - galactarate dehydratase, at 5,031,323 to 5,032,876 _4225 Psyr_4226: Psyr_4226 - D-galactonate transporter, at 5,032,887 to 5,034,272 _4226 Psyr_4227: Psyr_4227 - Dihydrodipicolinate synthetase, at 5,034,437 to 5,035,348 _4227 Position (kb) 5032 5033 5034 5035Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5031.906 kb on + strand, within Psyr_4225at 5031.906 kb on + strand, within Psyr_4225at 5031.907 kb on - strand, within Psyr_4225at 5031.907 kb on - strand, within Psyr_4225at 5031.907 kb on - strand, within Psyr_4225at 5031.924 kb on + strand, within Psyr_4225at 5031.981 kb on + strand, within Psyr_4225at 5031.982 kb on - strand, within Psyr_4225at 5032.172 kb on + strand, within Psyr_4225at 5032.172 kb on + strand, within Psyr_4225at 5032.172 kb on + strand, within Psyr_4225at 5032.173 kb on - strand, within Psyr_4225at 5032.173 kb on - strand, within Psyr_4225at 5032.173 kb on - strand, within Psyr_4225at 5032.173 kb on - strand, within Psyr_4225at 5032.297 kb on + strand, within Psyr_4225at 5032.297 kb on + strand, within Psyr_4225at 5032.297 kb on + strand, within Psyr_4225at 5032.302 kb on - strand, within Psyr_4225at 5032.307 kb on - strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.320 kb on + strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.321 kb on - strand, within Psyr_4225at 5032.356 kb on + strand, within Psyr_4225at 5032.357 kb on - strand, within Psyr_4225at 5032.395 kb on + strand, within Psyr_4225at 5032.395 kb on + strand, within Psyr_4225at 5032.396 kb on - strand, within Psyr_4225at 5032.533 kb on + strand, within Psyr_4225at 5032.534 kb on - strand, within Psyr_4225at 5032.534 kb on - strand, within Psyr_4225at 5032.718 kb on - strand, within Psyr_4225at 5032.727 kb on - strandat 5032.727 kb on - strandat 5032.740 kb on - strandat 5032.842 kb on + strandat 5032.842 kb on + strandat 5032.842 kb on + strandat 5032.842 kb on + strandat 5032.842 kb on + strandat 5032.842 kb on + strandat 5032.842 kb on + strandat 5032.843 kb on - strandat 5032.843 kb on - strandat 5032.843 kb on - strandat 5032.843 kb on - strandat 5032.843 kb on - strandat 5032.843 kb on - strandat 5032.843 kb on - strandat 5032.993 kb on + strandat 5032.993 kb on + strandat 5032.994 kb on - strandat 5033.071 kb on + strand, within Psyr_4226at 5033.072 kb on - strand, within Psyr_4226at 5033.072 kb on - strand, within Psyr_4226at 5033.254 kb on + strand, within Psyr_4226at 5033.254 kb on + strand, within Psyr_4226at 5033.254 kb on + strand, within Psyr_4226at 5033.254 kb on + strand, within Psyr_4226at 5033.255 kb on - strand, within Psyr_4226at 5033.255 kb on - strand, within Psyr_4226at 5033.255 kb on - strand, within Psyr_4226at 5033.255 kb on - strand, within Psyr_4226at 5033.255 kb on - strand, within Psyr_4226at 5033.482 kb on + strand, within Psyr_4226at 5033.482 kb on + strand, within Psyr_4226at 5033.482 kb on + strand, within Psyr_4226at 5033.482 kb on + strand, within Psyr_4226at 5033.483 kb on - strand, within Psyr_4226at 5033.483 kb on - strand, within Psyr_4226at 5033.483 kb on - strand, within Psyr_4226at 5033.503 kb on + strand, within Psyr_4226at 5033.515 kb on + strand, within Psyr_4226at 5033.515 kb on + strand, within Psyr_4226at 5033.515 kb on + strand, within Psyr_4226at 5033.515 kb on + strand, within Psyr_4226at 5033.515 kb on + strand, within Psyr_4226at 5033.515 kb on + strand, within Psyr_4226at 5033.515 kb on + strand, within Psyr_4226at 5033.515 kb on + strand, within Psyr_4226at 5033.515 kb on + strand, within Psyr_4226at 5033.516 kb on - strand, within Psyr_4226at 5033.516 kb on - strand, within Psyr_4226at 5033.516 kb on - strand, within Psyr_4226at 5033.516 kb on - strand, within Psyr_4226at 5033.516 kb on - strand, within Psyr_4226at 5033.516 kb on - strand, within Psyr_4226at 5033.531 kb on + strand, within Psyr_4226at 5033.531 kb on + strand, within Psyr_4226at 5033.531 kb on + strand, within Psyr_4226at 5033.531 kb on + strand, within Psyr_4226at 5033.531 kb on + strand, within Psyr_4226at 5033.531 kb on + strand, within Psyr_4226at 5033.532 kb on - strand, within Psyr_4226at 5033.532 kb on - strand, within Psyr_4226at 5033.532 kb on - strand, within Psyr_4226at 5033.532 kb on - strand, within Psyr_4226at 5033.557 kb on + strand, within Psyr_4226at 5033.557 kb on + strand, within Psyr_4226at 5033.557 kb on + strand, within Psyr_4226at 5033.557 kb on + strand, within Psyr_4226at 5033.558 kb on - strand, within Psyr_4226at 5033.558 kb on - strand, within Psyr_4226at 5033.558 kb on - strand, within Psyr_4226at 5033.558 kb on - strand, within Psyr_4226at 5033.558 kb on - strand, within Psyr_4226at 5033.558 kb on - strand, within Psyr_4226at 5033.692 kb on + strand, within Psyr_4226at 5033.692 kb on + strand, within Psyr_4226at 5033.693 kb on - strand, within Psyr_4226at 5033.768 kb on - strand, within Psyr_4226at 5033.768 kb on - strand, within Psyr_4226at 5033.773 kb on + strand, within Psyr_4226at 5033.773 kb on + strand, within Psyr_4226at 5033.774 kb on - strand, within Psyr_4226at 5033.818 kb on + strand, within Psyr_4226at 5033.819 kb on - strand, within Psyr_4226at 5033.819 kb on - strand, within Psyr_4226at 5033.986 kb on + strand, within Psyr_4226at 5033.986 kb on + strand, within Psyr_4226at 5033.986 kb on + strand, within Psyr_4226at 5033.986 kb on + strand, within Psyr_4226at 5033.986 kb on + strand, within Psyr_4226at 5033.986 kb on + strand, within Psyr_4226at 5033.987 kb on - strand, within Psyr_4226at 5033.987 kb on - strand, within Psyr_4226at 5034.095 kb on - strand, within Psyr_4226at 5034.095 kb on - strand, within Psyr_4226at 5034.095 kb on - strand, within Psyr_4226at 5034.095 kb on - strand, within Psyr_4226at 5034.095 kb on - strand, within Psyr_4226at 5034.119 kb on + strand, within Psyr_4226at 5034.120 kb on - strand, within Psyr_4226at 5034.120 kb on - strand, within Psyr_4226at 5034.120 kb on - strand, within Psyr_4226at 5034.120 kb on - strand, within Psyr_4226at 5034.120 kb on - strand, within Psyr_4226at 5034.120 kb on - strand, within Psyr_4226at 5034.120 kb on - strand, within Psyr_4226at 5034.120 kb on - strand, within Psyr_4226at 5034.121 kb on + strand, within Psyr_4226at 5034.121 kb on + strand, within Psyr_4226at 5034.121 kb on + strand, within Psyr_4226at 5034.199 kb on + strandat 5034.199 kb on + strandat 5034.200 kb on - strandat 5034.275 kb on + strandat 5034.275 kb on + strandat 5034.276 kb on - strandat 5034.276 kb on - strandat 5034.292 kb on - strandat 5034.292 kb on - strandat 5034.308 kb on - strandat 5034.325 kb on + strandat 5034.326 kb on - strandat 5034.375 kb on + strandat 5034.574 kb on - strand, within Psyr_4227at 5034.627 kb on + strand, within Psyr_4227at 5034.627 kb on + strand, within Psyr_4227at 5034.627 kb on + strand, within Psyr_4227at 5034.627 kb on + strand, within Psyr_4227at 5034.628 kb on - strand, within Psyr_4227at 5034.628 kb on - strand, within Psyr_4227at 5034.628 kb on - strand, within Psyr_4227at 5034.628 kb on - strand, within Psyr_4227at 5034.669 kb on + strand, within Psyr_4227at 5034.717 kb on + strand, within Psyr_4227at 5034.717 kb on + strand, within Psyr_4227at 5034.717 kb on + strand, within Psyr_4227at 5034.741 kb on + strand, within Psyr_4227at 5034.741 kb on + strand, within Psyr_4227at 5034.741 kb on + strand, within Psyr_4227at 5034.741 kb on + strand, within Psyr_4227at 5034.741 kb on + strand, within Psyr_4227at 5034.742 kb on - strand, within Psyr_4227at 5034.742 kb on - strand, within Psyr_4227at 5034.742 kb on - strand, within Psyr_4227at 5034.753 kb on + strand, within Psyr_4227at 5034.753 kb on + strand, within Psyr_4227at 5034.753 kb on + strand, within Psyr_4227at 5034.754 kb on - strand, within Psyr_4227at 5034.754 kb on - strand, within Psyr_4227at 5034.754 kb on - strand, within Psyr_4227at 5034.754 kb on - strand, within Psyr_4227at 5034.853 kb on - strand, within Psyr_4227at 5034.927 kb on + strand, within Psyr_4227at 5034.928 kb on - strand, within Psyr_4227at 5035.008 kb on + strand, within Psyr_4227at 5035.251 kb on + strand, within Psyr_4227

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM
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5,031,906 + Psyr_4225 0.38 -0.8
5,031,906 + Psyr_4225 0.38 -0.4
5,031,907 - Psyr_4225 0.38 +1.0
5,031,907 - Psyr_4225 0.38 -1.0
5,031,907 - Psyr_4225 0.38 +0.4
5,031,924 + Psyr_4225 0.39 +0.2
5,031,981 + Psyr_4225 0.42 -1.6
5,031,982 - Psyr_4225 0.42 -1.3
5,032,172 + Psyr_4225 0.55 -0.4
5,032,172 + Psyr_4225 0.55 -1.1
5,032,172 + Psyr_4225 0.55 +0.4
5,032,173 - Psyr_4225 0.55 +0.3
5,032,173 - Psyr_4225 0.55 +0.5
5,032,173 - Psyr_4225 0.55 +0.7
5,032,173 - Psyr_4225 0.55 -0.1
5,032,297 + Psyr_4225 0.63 -2.1
5,032,297 + Psyr_4225 0.63 -0.3
5,032,297 + Psyr_4225 0.63 -0.7
5,032,302 - Psyr_4225 0.63 +1.4
5,032,307 - Psyr_4225 0.63 -0.4
5,032,320 + Psyr_4225 0.64 -0.4
5,032,320 + Psyr_4225 0.64 -2.4
5,032,320 + Psyr_4225 0.64 +0.5
5,032,320 + Psyr_4225 0.64 -1.5
5,032,320 + Psyr_4225 0.64 -0.8
5,032,320 + Psyr_4225 0.64 +1.3
5,032,320 + Psyr_4225 0.64 +0.6
5,032,320 + Psyr_4225 0.64 -1.0
5,032,320 + Psyr_4225 0.64 +1.0
5,032,320 + Psyr_4225 0.64 -0.1
5,032,320 + Psyr_4225 0.64 +0.6
5,032,320 + Psyr_4225 0.64 +0.4
5,032,320 + Psyr_4225 0.64 +1.6
5,032,320 + Psyr_4225 0.64 +0.1
5,032,320 + Psyr_4225 0.64 -2.3
5,032,320 + Psyr_4225 0.64 -0.6
5,032,320 + Psyr_4225 0.64 +1.2
5,032,320 + Psyr_4225 0.64 +0.6
5,032,320 + Psyr_4225 0.64 -0.3
5,032,321 - Psyr_4225 0.64 -1.5
5,032,321 - Psyr_4225 0.64 -0.2
5,032,321 - Psyr_4225 0.64 +2.7
5,032,321 - Psyr_4225 0.64 -0.2
5,032,321 - Psyr_4225 0.64 -0.9
5,032,321 - Psyr_4225 0.64 +0.9
5,032,321 - Psyr_4225 0.64 +0.2
5,032,321 - Psyr_4225 0.64 -3.4
5,032,321 - Psyr_4225 0.64 -0.6
5,032,321 - Psyr_4225 0.64 -0.0
5,032,321 - Psyr_4225 0.64 +1.7
5,032,321 - Psyr_4225 0.64 -0.3
5,032,321 - Psyr_4225 0.64 -0.3
5,032,321 - Psyr_4225 0.64 -1.9
5,032,321 - Psyr_4225 0.64 -1.4
5,032,321 - Psyr_4225 0.64 +0.2
5,032,321 - Psyr_4225 0.64 +2.0
5,032,321 - Psyr_4225 0.64 +2.7
5,032,321 - Psyr_4225 0.64 +0.1
5,032,321 - Psyr_4225 0.64 +0.3
5,032,356 + Psyr_4225 0.66 +0.7
5,032,357 - Psyr_4225 0.67 -0.8
5,032,395 + Psyr_4225 0.69 +0.4
5,032,395 + Psyr_4225 0.69 -0.4
5,032,396 - Psyr_4225 0.69 +0.8
5,032,533 + Psyr_4225 0.78 -0.2
5,032,534 - Psyr_4225 0.78 +1.2
5,032,534 - Psyr_4225 0.78 -0.8
5,032,718 - Psyr_4225 0.90 -0.6
5,032,727 - -0.5
5,032,727 - +0.4
5,032,740 - +0.5
5,032,842 + +0.6
5,032,842 + -0.7
5,032,842 + +0.8
5,032,842 + -0.4
5,032,842 + -1.4
5,032,842 + -0.5
5,032,842 + -1.1
5,032,843 - +0.2
5,032,843 - -0.8
5,032,843 - -2.5
5,032,843 - -1.5
5,032,843 - -0.4
5,032,843 - -1.2
5,032,843 - -2.3
5,032,993 + -0.6
5,032,993 + +0.3
5,032,994 - -0.2
5,033,071 + Psyr_4226 0.13 +0.5
5,033,072 - Psyr_4226 0.13 +0.9
5,033,072 - Psyr_4226 0.13 +0.6
5,033,254 + Psyr_4226 0.26 -2.2
5,033,254 + Psyr_4226 0.26 +0.4
5,033,254 + Psyr_4226 0.26 +3.0
5,033,254 + Psyr_4226 0.26 +0.7
5,033,255 - Psyr_4226 0.27 -0.3
5,033,255 - Psyr_4226 0.27 +0.4
5,033,255 - Psyr_4226 0.27 +1.2
5,033,255 - Psyr_4226 0.27 -2.2
5,033,255 - Psyr_4226 0.27 -0.6
5,033,482 + Psyr_4226 0.43 +0.5
5,033,482 + Psyr_4226 0.43 +0.3
5,033,482 + Psyr_4226 0.43 -0.0
5,033,482 + Psyr_4226 0.43 -1.0
5,033,483 - Psyr_4226 0.43 -0.7
5,033,483 - Psyr_4226 0.43 +0.3
5,033,483 - Psyr_4226 0.43 -0.4
5,033,503 + Psyr_4226 0.44 +1.5
5,033,515 + Psyr_4226 0.45 +1.3
5,033,515 + Psyr_4226 0.45 +0.8
5,033,515 + Psyr_4226 0.45 -0.2
5,033,515 + Psyr_4226 0.45 -0.1
5,033,515 + Psyr_4226 0.45 -0.1
5,033,515 + Psyr_4226 0.45 +0.4
5,033,515 + Psyr_4226 0.45 -1.0
5,033,515 + Psyr_4226 0.45 -0.2
5,033,515 + Psyr_4226 0.45 +1.2
5,033,516 - Psyr_4226 0.45 +1.2
5,033,516 - Psyr_4226 0.45 +2.2
5,033,516 - Psyr_4226 0.45 -0.1
5,033,516 - Psyr_4226 0.45 +0.7
5,033,516 - Psyr_4226 0.45 +0.4
5,033,516 - Psyr_4226 0.45 +2.5
5,033,531 + Psyr_4226 0.46 -0.6
5,033,531 + Psyr_4226 0.46 +0.4
5,033,531 + Psyr_4226 0.46 +2.3
5,033,531 + Psyr_4226 0.46 +1.3
5,033,531 + Psyr_4226 0.46 -0.5
5,033,531 + Psyr_4226 0.46 -0.0
5,033,532 - Psyr_4226 0.47 +1.4
5,033,532 - Psyr_4226 0.47 -2.0
5,033,532 - Psyr_4226 0.47 +0.6
5,033,532 - Psyr_4226 0.47 +0.0
5,033,557 + Psyr_4226 0.48 -0.6
5,033,557 + Psyr_4226 0.48 +0.6
5,033,557 + Psyr_4226 0.48 -0.3
5,033,557 + Psyr_4226 0.48 +0.6
5,033,558 - Psyr_4226 0.48 -1.5
5,033,558 - Psyr_4226 0.48 +2.2
5,033,558 - Psyr_4226 0.48 +0.2
5,033,558 - Psyr_4226 0.48 -0.3
5,033,558 - Psyr_4226 0.48 -0.5
5,033,558 - Psyr_4226 0.48 -0.2
5,033,692 + Psyr_4226 0.58 -1.1
5,033,692 + Psyr_4226 0.58 -2.3
5,033,693 - Psyr_4226 0.58 -1.0
5,033,768 - Psyr_4226 0.64 -1.5
5,033,768 - Psyr_4226 0.64 -1.5
5,033,773 + Psyr_4226 0.64 -0.5
5,033,773 + Psyr_4226 0.64 +0.2
5,033,774 - Psyr_4226 0.64 +2.7
5,033,818 + Psyr_4226 0.67 -0.4
5,033,819 - Psyr_4226 0.67 +1.7
5,033,819 - Psyr_4226 0.67 +0.7
5,033,986 + Psyr_4226 0.79 +0.7
5,033,986 + Psyr_4226 0.79 +0.6
5,033,986 + Psyr_4226 0.79 -0.5
5,033,986 + Psyr_4226 0.79 +0.3
5,033,986 + Psyr_4226 0.79 +1.2
5,033,986 + Psyr_4226 0.79 -1.2
5,033,987 - Psyr_4226 0.79 +2.3
5,033,987 - Psyr_4226 0.79 -0.3
5,034,095 - Psyr_4226 0.87 +2.2
5,034,095 - Psyr_4226 0.87 +1.3
5,034,095 - Psyr_4226 0.87 +0.8
5,034,095 - Psyr_4226 0.87 +0.2
5,034,095 - Psyr_4226 0.87 +0.1
5,034,119 + Psyr_4226 0.89 -0.6
5,034,120 - Psyr_4226 0.89 +0.5
5,034,120 - Psyr_4226 0.89 +1.1
5,034,120 - Psyr_4226 0.89 +2.8
5,034,120 - Psyr_4226 0.89 +1.4
5,034,120 - Psyr_4226 0.89 +0.7
5,034,120 - Psyr_4226 0.89 +3.5
5,034,120 - Psyr_4226 0.89 -0.8
5,034,120 - Psyr_4226 0.89 -1.8
5,034,121 + Psyr_4226 0.89 +0.8
5,034,121 + Psyr_4226 0.89 -0.5
5,034,121 + Psyr_4226 0.89 -1.5
5,034,199 + -0.7
5,034,199 + +1.2
5,034,200 - +0.4
5,034,275 + +0.6
5,034,275 + +0.6
5,034,276 - +0.1
5,034,276 - -0.7
5,034,292 - +1.1
5,034,292 - +0.5
5,034,308 - -0.6
5,034,325 + -1.4
5,034,326 - -0.7
5,034,375 + -1.2
5,034,574 - Psyr_4227 0.15 +0.6
5,034,627 + Psyr_4227 0.21 +0.2
5,034,627 + Psyr_4227 0.21 -0.2
5,034,627 + Psyr_4227 0.21 -0.8
5,034,627 + Psyr_4227 0.21 +0.0
5,034,628 - Psyr_4227 0.21 +1.0
5,034,628 - Psyr_4227 0.21 +0.2
5,034,628 - Psyr_4227 0.21 -0.0
5,034,628 - Psyr_4227 0.21 +1.4
5,034,669 + Psyr_4227 0.25 +1.5
5,034,717 + Psyr_4227 0.31 -0.2
5,034,717 + Psyr_4227 0.31 -0.5
5,034,717 + Psyr_4227 0.31 -0.7
5,034,741 + Psyr_4227 0.33 -0.6
5,034,741 + Psyr_4227 0.33 -1.1
5,034,741 + Psyr_4227 0.33 +0.6
5,034,741 + Psyr_4227 0.33 -0.8
5,034,741 + Psyr_4227 0.33 +0.3
5,034,742 - Psyr_4227 0.33 -0.0
5,034,742 - Psyr_4227 0.33 -0.8
5,034,742 - Psyr_4227 0.33 +0.2
5,034,753 + Psyr_4227 0.35 -0.4
5,034,753 + Psyr_4227 0.35 +0.9
5,034,753 + Psyr_4227 0.35 -0.1
5,034,754 - Psyr_4227 0.35 +1.5
5,034,754 - Psyr_4227 0.35 +1.3
5,034,754 - Psyr_4227 0.35 +0.8
5,034,754 - Psyr_4227 0.35 -2.5
5,034,853 - Psyr_4227 0.46 +0.0
5,034,927 + Psyr_4227 0.54 -1.3
5,034,928 - Psyr_4227 0.54 +2.2
5,035,008 + Psyr_4227 0.63 -0.7
5,035,251 + Psyr_4227 0.89 +1.6

Or see this region's nucleotide sequence