Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3895 and Psyr_3896 are separated by 209 nucleotides Psyr_3896 and Psyr_3897 are separated by 200 nucleotides Psyr_3897 and Psyr_3898 are separated by 126 nucleotides Psyr_3898 and Psyr_3899 are separated by 88 nucleotides
Psyr_3895: Psyr_3895 - RNAse T, at 4,636,903 to 4,637,580
_3895
Psyr_3896: Psyr_3896 - BFD-like [2Fe-2S]-binding region, at 4,637,790 to 4,638,008
_3896
Psyr_3897: Psyr_3897 - Bacterioferritin, at 4,638,209 to 4,638,679
_3897
Psyr_3898: Psyr_3898 - Glutaredoxin-related protein, at 4,638,806 to 4,639,132
_3898
Psyr_3899: Psyr_3899 - Molybdopterin oxidoreductase:molybdopterin dinucleotide-binding region, at 4,639,221 to 4,641,329
_3899
Position (kb) 4638
4639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4637.587 kb on + strand at 4637.587 kb on + strand at 4637.587 kb on + strand at 4637.588 kb on - strand at 4637.588 kb on - strand at 4637.588 kb on - strand at 4637.704 kb on + strand at 4637.767 kb on - strand at 4637.784 kb on + strand at 4637.784 kb on + strand at 4637.785 kb on - strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.862 kb on + strand, within Psyr_3896 at 4637.942 kb on + strand, within Psyr_3896 at 4638.021 kb on - strand at 4638.153 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.179 kb on + strand at 4638.180 kb on - strand at 4638.180 kb on - strand at 4638.180 kb on - strand at 4638.180 kb on - strand at 4638.180 kb on - strand at 4638.180 kb on - strand at 4638.180 kb on - strand at 4638.181 kb on + strand at 4638.181 kb on + strand at 4638.181 kb on + strand at 4638.181 kb on + strand at 4638.181 kb on + strand at 4638.181 kb on + strand at 4638.182 kb on - strand at 4638.182 kb on - strand at 4638.182 kb on - strand at 4638.182 kb on - strand at 4638.182 kb on - strand at 4638.182 kb on - strand at 4638.182 kb on - strand at 4638.281 kb on + strand, within Psyr_3897 at 4638.282 kb on - strand, within Psyr_3897 at 4638.302 kb on + strand, within Psyr_3897 at 4638.303 kb on - strand, within Psyr_3897 at 4638.303 kb on - strand, within Psyr_3897 at 4638.341 kb on + strand, within Psyr_3897 at 4638.341 kb on + strand, within Psyr_3897 at 4638.341 kb on + strand, within Psyr_3897 at 4638.341 kb on + strand, within Psyr_3897 at 4638.342 kb on - strand, within Psyr_3897 at 4638.342 kb on - strand, within Psyr_3897 at 4638.343 kb on + strand, within Psyr_3897 at 4638.343 kb on + strand, within Psyr_3897 at 4638.344 kb on - strand, within Psyr_3897 at 4638.344 kb on - strand, within Psyr_3897 at 4638.344 kb on - strand, within Psyr_3897 at 4638.368 kb on + strand, within Psyr_3897 at 4638.369 kb on - strand, within Psyr_3897 at 4638.369 kb on - strand, within Psyr_3897 at 4638.369 kb on - strand, within Psyr_3897 at 4638.640 kb on - strand at 4638.640 kb on - strand at 4638.653 kb on + strand at 4638.653 kb on + strand at 4638.653 kb on + strand at 4638.653 kb on + strand at 4638.654 kb on - strand at 4638.654 kb on - strand at 4638.654 kb on - strand at 4638.654 kb on - strand at 4638.654 kb on - strand at 4638.742 kb on + strand at 4638.742 kb on + strand at 4638.743 kb on - strand at 4638.771 kb on - strand at 4638.780 kb on + strand at 4638.807 kb on + strand at 4639.186 kb on - strand at 4639.222 kb on + strand at 4639.222 kb on + strand at 4639.347 kb on + strand at 4639.549 kb on + strand, within Psyr_3899 at 4639.549 kb on + strand, within Psyr_3899 at 4639.550 kb on - strand, within Psyr_3899 at 4639.550 kb on - strand, within Psyr_3899 at 4639.550 kb on - strand, within Psyr_3899 at 4639.550 kb on - strand, within Psyr_3899 at 4639.550 kb on - strand, within Psyr_3899
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 4,637,587 + +0.4 4,637,587 + +0.7 4,637,587 + -0.1 4,637,588 - +2.5 4,637,588 - -0.7 4,637,588 - -0.5 4,637,704 + -0.6 4,637,767 - -0.2 4,637,784 + +2.7 4,637,784 + -0.1 4,637,785 - +0.8 4,637,789 + +0.5 4,637,789 + -2.0 4,637,789 + +1.1 4,637,789 + -1.4 4,637,789 + -0.2 4,637,789 + +1.5 4,637,789 + -0.3 4,637,789 + -1.0 4,637,789 + -0.7 4,637,789 + +0.0 4,637,789 + +0.5 4,637,789 + -2.1 4,637,789 + -1.2 4,637,789 + -0.1 4,637,789 + +1.1 4,637,789 + -1.2 4,637,789 + -0.5 4,637,789 + +0.5 4,637,789 + -1.3 4,637,790 - -1.2 4,637,790 - -0.6 4,637,790 - +0.4 4,637,790 - -0.3 4,637,790 - +0.7 4,637,790 - +0.6 4,637,790 - +0.4 4,637,790 - -2.2 4,637,790 - +0.4 4,637,790 - -0.3 4,637,790 - -0.3 4,637,790 - +0.5 4,637,790 - -0.3 4,637,790 - -0.2 4,637,790 - +1.0 4,637,790 - -2.0 4,637,790 - -0.5 4,637,790 - +2.9 4,637,790 - +1.9 4,637,790 - -0.6 4,637,790 - -0.7 4,637,793 + -1.5 4,637,793 + -1.4 4,637,793 + -0.5 4,637,793 + +1.8 4,637,793 + +0.4 4,637,793 + -0.5 4,637,793 + -0.6 4,637,793 + +0.1 4,637,793 + +1.7 4,637,793 + -1.5 4,637,793 + -2.7 4,637,793 + -1.3 4,637,793 + -1.4 4,637,793 + -1.6 4,637,794 - -0.0 4,637,794 - +1.7 4,637,794 - -0.8 4,637,794 - +0.1 4,637,794 - -0.7 4,637,794 - +1.5 4,637,794 - +0.0 4,637,794 - +3.9 4,637,794 - +1.1 4,637,794 - +0.5 4,637,794 - -1.9 4,637,794 - -0.3 4,637,794 - +0.9 4,637,794 - -1.2 4,637,794 - -1.4 4,637,794 - -1.3 4,637,794 - -0.9 4,637,794 - -0.4 4,637,862 + Psyr_3896 0.33 +1.2 4,637,942 + Psyr_3896 0.69 +0.5 4,638,021 - +1.5 4,638,153 + -1.2 4,638,177 + -0.5 4,638,177 + +0.5 4,638,177 + +0.3 4,638,177 + +0.5 4,638,177 + -0.8 4,638,177 + -0.7 4,638,177 + -0.6 4,638,177 + -0.1 4,638,177 + -1.2 4,638,178 - -0.2 4,638,178 - +0.3 4,638,178 - -1.5 4,638,178 - +0.3 4,638,178 - -0.7 4,638,178 - +0.8 4,638,178 - -1.6 4,638,178 - +0.1 4,638,178 - +1.0 4,638,178 - -0.0 4,638,178 - +1.0 4,638,178 - -0.5 4,638,178 - -1.3 4,638,178 - -0.2 4,638,179 + +0.9 4,638,180 - +0.0 4,638,180 - +0.1 4,638,180 - -2.4 4,638,180 - +0.1 4,638,180 - +0.2 4,638,180 - -0.7 4,638,180 - -1.6 4,638,181 + -1.7 4,638,181 + +1.7 4,638,181 + +1.1 4,638,181 + -1.0 4,638,181 + -2.7 4,638,181 + -0.0 4,638,182 - -0.0 4,638,182 - -0.5 4,638,182 - -1.9 4,638,182 - +0.8 4,638,182 - +1.4 4,638,182 - +1.4 4,638,182 - +2.1 4,638,281 + Psyr_3897 0.15 +1.8 4,638,282 - Psyr_3897 0.15 -2.8 4,638,302 + Psyr_3897 0.20 +0.4 4,638,303 - Psyr_3897 0.20 -0.5 4,638,303 - Psyr_3897 0.20 -0.0 4,638,341 + Psyr_3897 0.28 -0.7 4,638,341 + Psyr_3897 0.28 +0.5 4,638,341 + Psyr_3897 0.28 -0.2 4,638,341 + Psyr_3897 0.28 -0.7 4,638,342 - Psyr_3897 0.28 -1.9 4,638,342 - Psyr_3897 0.28 +1.1 4,638,343 + Psyr_3897 0.28 +0.1 4,638,343 + Psyr_3897 0.28 -1.1 4,638,344 - Psyr_3897 0.29 -0.4 4,638,344 - Psyr_3897 0.29 -0.9 4,638,344 - Psyr_3897 0.29 -1.6 4,638,368 + Psyr_3897 0.34 +1.1 4,638,369 - Psyr_3897 0.34 -0.7 4,638,369 - Psyr_3897 0.34 +1.8 4,638,369 - Psyr_3897 0.34 +0.2 4,638,640 - +1.1 4,638,640 - -0.9 4,638,653 + +0.5 4,638,653 + +1.1 4,638,653 + -0.5 4,638,653 + -0.2 4,638,654 - -1.5 4,638,654 - -0.2 4,638,654 - -0.5 4,638,654 - +1.7 4,638,654 - +0.0 4,638,742 + +2.1 4,638,742 + -0.8 4,638,743 - -0.5 4,638,771 - -0.7 4,638,780 + -1.8 4,638,807 + +1.1 4,639,186 - -1.0 4,639,222 + +1.4 4,639,222 + -2.2 4,639,347 + +1.1 4,639,549 + Psyr_3899 0.16 -0.3 4,639,549 + Psyr_3899 0.16 -0.8 4,639,550 - Psyr_3899 0.16 +0.3 4,639,550 - Psyr_3899 0.16 -0.1 4,639,550 - Psyr_3899 0.16 -0.5 4,639,550 - Psyr_3899 0.16 +0.5 4,639,550 - Psyr_3899 0.16 -0.9
Or see this region's nucleotide sequence