Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3682 and Psyr_3683 are separated by 328 nucleotides Psyr_3683 and Psyr_3684 are separated by 89 nucleotides Psyr_3684 and Psyr_3685 are separated by 75 nucleotides
Psyr_3682: Psyr_3682 - L-sorbosone dehydrogenase, at 4,368,342 to 4,369,670
_3682
Psyr_3683: Psyr_3683 - NLP/P60, at 4,369,999 to 4,370,544
_3683
Psyr_3684: Psyr_3684 - NLP/P60, at 4,370,634 to 4,371,362
_3684
Psyr_3685: Psyr_3685 - Silent information regulator protein Sir2, at 4,371,438 to 4,372,181
_3685
Position (kb) 4369
4370
4371 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4368.999 kb on + strand, within Psyr_3682 at 4368.999 kb on + strand, within Psyr_3682 at 4368.999 kb on + strand, within Psyr_3682 at 4369.000 kb on - strand, within Psyr_3682 at 4369.000 kb on - strand, within Psyr_3682 at 4369.000 kb on - strand, within Psyr_3682 at 4369.218 kb on + strand, within Psyr_3682 at 4369.219 kb on - strand, within Psyr_3682 at 4369.219 kb on - strand, within Psyr_3682 at 4369.249 kb on - strand, within Psyr_3682 at 4369.266 kb on + strand, within Psyr_3682 at 4369.266 kb on + strand, within Psyr_3682 at 4369.266 kb on + strand, within Psyr_3682 at 4369.267 kb on - strand, within Psyr_3682 at 4369.267 kb on - strand, within Psyr_3682 at 4369.267 kb on - strand, within Psyr_3682 at 4369.267 kb on - strand, within Psyr_3682 at 4369.681 kb on - strand at 4369.776 kb on - strand at 4369.863 kb on + strand at 4369.863 kb on + strand at 4369.864 kb on - strand at 4369.918 kb on + strand at 4369.919 kb on - strand at 4370.000 kb on + strand at 4370.054 kb on + strand, within Psyr_3683 at 4370.054 kb on + strand, within Psyr_3683 at 4370.054 kb on + strand, within Psyr_3683 at 4370.055 kb on - strand, within Psyr_3683 at 4370.055 kb on - strand, within Psyr_3683 at 4370.144 kb on + strand, within Psyr_3683 at 4370.144 kb on + strand, within Psyr_3683 at 4370.144 kb on + strand, within Psyr_3683 at 4370.144 kb on + strand, within Psyr_3683 at 4370.144 kb on + strand, within Psyr_3683 at 4370.144 kb on + strand, within Psyr_3683 at 4370.144 kb on + strand, within Psyr_3683 at 4370.144 kb on + strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.300 kb on + strand, within Psyr_3683 at 4370.300 kb on + strand, within Psyr_3683 at 4370.306 kb on - strand, within Psyr_3683 at 4370.306 kb on - strand, within Psyr_3683 at 4370.306 kb on - strand, within Psyr_3683 at 4370.306 kb on - strand, within Psyr_3683 at 4370.306 kb on - strand, within Psyr_3683 at 4370.306 kb on - strand, within Psyr_3683 at 4370.573 kb on + strand at 4370.573 kb on + strand at 4370.601 kb on - strand at 4370.632 kb on - strand at 4370.632 kb on - strand at 4370.639 kb on + strand at 4370.666 kb on + strand at 4371.382 kb on + strand at 4371.382 kb on + strand at 4371.382 kb on + strand at 4371.386 kb on + strand at 4371.387 kb on - strand at 4371.387 kb on - strand at 4371.387 kb on - strand at 4371.387 kb on - strand at 4371.387 kb on - strand at 4371.387 kb on - strand at 4371.400 kb on + strand at 4371.400 kb on + strand at 4371.409 kb on + strand at 4371.409 kb on + strand at 4371.410 kb on - strand at 4371.440 kb on - strand at 4371.450 kb on + strand at 4371.451 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 4,368,999 + Psyr_3682 0.49 -1.4 4,368,999 + Psyr_3682 0.49 +2.6 4,368,999 + Psyr_3682 0.49 -1.2 4,369,000 - Psyr_3682 0.50 -1.9 4,369,000 - Psyr_3682 0.50 +1.2 4,369,000 - Psyr_3682 0.50 +1.0 4,369,218 + Psyr_3682 0.66 +0.8 4,369,219 - Psyr_3682 0.66 +0.2 4,369,219 - Psyr_3682 0.66 +0.3 4,369,249 - Psyr_3682 0.68 +2.2 4,369,266 + Psyr_3682 0.70 -0.6 4,369,266 + Psyr_3682 0.70 +0.9 4,369,266 + Psyr_3682 0.70 -0.6 4,369,267 - Psyr_3682 0.70 +1.4 4,369,267 - Psyr_3682 0.70 +4.3 4,369,267 - Psyr_3682 0.70 +1.9 4,369,267 - Psyr_3682 0.70 +0.2 4,369,681 - -0.4 4,369,776 - +1.7 4,369,863 + -0.8 4,369,863 + +1.4 4,369,864 - -0.7 4,369,918 + +1.0 4,369,919 - +0.5 4,370,000 + +0.2 4,370,054 + Psyr_3683 0.10 +0.2 4,370,054 + Psyr_3683 0.10 -0.3 4,370,054 + Psyr_3683 0.10 -0.2 4,370,055 - Psyr_3683 0.10 +0.2 4,370,055 - Psyr_3683 0.10 +2.2 4,370,144 + Psyr_3683 0.27 -1.8 4,370,144 + Psyr_3683 0.27 +0.8 4,370,144 + Psyr_3683 0.27 -0.2 4,370,144 + Psyr_3683 0.27 -1.0 4,370,144 + Psyr_3683 0.27 -0.9 4,370,144 + Psyr_3683 0.27 +0.3 4,370,144 + Psyr_3683 0.27 -0.1 4,370,144 + Psyr_3683 0.27 +2.2 4,370,145 - Psyr_3683 0.27 -0.1 4,370,145 - Psyr_3683 0.27 -0.8 4,370,145 - Psyr_3683 0.27 +1.3 4,370,145 - Psyr_3683 0.27 +0.0 4,370,145 - Psyr_3683 0.27 +0.5 4,370,145 - Psyr_3683 0.27 +0.5 4,370,145 - Psyr_3683 0.27 -0.2 4,370,145 - Psyr_3683 0.27 +1.4 4,370,145 - Psyr_3683 0.27 -0.4 4,370,145 - Psyr_3683 0.27 -0.5 4,370,145 - Psyr_3683 0.27 -1.0 4,370,145 - Psyr_3683 0.27 -0.0 4,370,145 - Psyr_3683 0.27 -1.5 4,370,145 - Psyr_3683 0.27 -0.8 4,370,300 + Psyr_3683 0.55 -0.8 4,370,300 + Psyr_3683 0.55 -0.2 4,370,306 - Psyr_3683 0.56 -0.2 4,370,306 - Psyr_3683 0.56 -0.5 4,370,306 - Psyr_3683 0.56 -0.1 4,370,306 - Psyr_3683 0.56 +0.3 4,370,306 - Psyr_3683 0.56 +0.6 4,370,306 - Psyr_3683 0.56 -0.2 4,370,573 + -1.3 4,370,573 + +1.5 4,370,601 - -1.6 4,370,632 - +1.0 4,370,632 - +2.2 4,370,639 + +0.7 4,370,666 + +0.5 4,371,382 + -0.4 4,371,382 + -1.6 4,371,382 + +0.8 4,371,386 + +0.7 4,371,387 - -0.1 4,371,387 - +0.9 4,371,387 - +0.2 4,371,387 - -0.2 4,371,387 - -1.3 4,371,387 - -1.1 4,371,400 + -1.6 4,371,400 + -1.2 4,371,409 + +0.4 4,371,409 + -0.9 4,371,410 - -0.1 4,371,440 - +0.3 4,371,450 + -0.6 4,371,451 - +0.5
Or see this region's nucleotide sequence