Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3516 and Psyr_3517 are separated by 0 nucleotides Psyr_3517 and Psyr_3518 are separated by 151 nucleotides Psyr_3518 and Psyr_3519 are separated by 8 nucleotides
Psyr_3516: Psyr_3516 - Protein of unknown function DUF1338, at 4,192,314 to 4,193,705
_3516
Psyr_3517: Psyr_3517 - hypothetical protein, at 4,193,706 to 4,193,972
_3517
Psyr_3518: Psyr_3518 - hypothetical protein, at 4,194,124 to 4,194,519
_3518
Psyr_3519: Psyr_3519 - hypothetical protein, at 4,194,528 to 4,195,148
_3519
Position (kb) 4193
4194 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4192.778 kb on + strand, within Psyr_3516 at 4192.778 kb on + strand, within Psyr_3516 at 4192.779 kb on - strand, within Psyr_3516 at 4192.779 kb on - strand, within Psyr_3516 at 4192.921 kb on - strand, within Psyr_3516 at 4193.244 kb on + strand, within Psyr_3516 at 4193.245 kb on - strand, within Psyr_3516 at 4193.490 kb on + strand, within Psyr_3516 at 4193.491 kb on - strand, within Psyr_3516 at 4193.634 kb on + strand at 4193.635 kb on - strand at 4193.635 kb on - strand at 4193.700 kb on + strand at 4193.701 kb on - strand at 4193.701 kb on - strand at 4193.703 kb on + strand at 4193.703 kb on + strand at 4193.703 kb on + strand at 4193.703 kb on + strand at 4193.704 kb on - strand at 4193.704 kb on - strand at 4193.707 kb on + strand at 4193.708 kb on - strand at 4194.114 kb on - strand at 4194.199 kb on + strand, within Psyr_3518 at 4194.235 kb on - strand, within Psyr_3518 at 4194.235 kb on - strand, within Psyr_3518 at 4194.235 kb on - strand, within Psyr_3518 at 4194.361 kb on - strand, within Psyr_3518 at 4194.639 kb on - strand, within Psyr_3519 at 4194.639 kb on - strand, within Psyr_3519 at 4194.902 kb on - strand, within Psyr_3519 at 4194.918 kb on - strand, within Psyr_3519 at 4194.944 kb on + strand, within Psyr_3519 at 4194.944 kb on + strand, within Psyr_3519 at 4194.945 kb on - strand, within Psyr_3519
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 4,192,778 + Psyr_3516 0.33 -0.4 4,192,778 + Psyr_3516 0.33 -0.3 4,192,779 - Psyr_3516 0.33 +0.6 4,192,779 - Psyr_3516 0.33 -0.1 4,192,921 - Psyr_3516 0.44 +0.5 4,193,244 + Psyr_3516 0.67 +0.9 4,193,245 - Psyr_3516 0.67 +0.5 4,193,490 + Psyr_3516 0.84 +0.9 4,193,491 - Psyr_3516 0.85 +0.0 4,193,634 + +0.1 4,193,635 - +0.8 4,193,635 - +3.1 4,193,700 + -0.5 4,193,701 - -0.1 4,193,701 - -0.1 4,193,703 + -1.7 4,193,703 + +0.9 4,193,703 + +3.0 4,193,703 + -0.5 4,193,704 - -1.8 4,193,704 - -0.1 4,193,707 + +0.2 4,193,708 - +0.8 4,194,114 - +1.3 4,194,199 + Psyr_3518 0.19 +0.1 4,194,235 - Psyr_3518 0.28 +0.3 4,194,235 - Psyr_3518 0.28 -0.4 4,194,235 - Psyr_3518 0.28 +1.3 4,194,361 - Psyr_3518 0.60 +0.0 4,194,639 - Psyr_3519 0.18 -1.3 4,194,639 - Psyr_3519 0.18 -1.4 4,194,902 - Psyr_3519 0.60 +0.3 4,194,918 - Psyr_3519 0.63 +0.3 4,194,944 + Psyr_3519 0.67 -1.2 4,194,944 + Psyr_3519 0.67 -0.9 4,194,945 - Psyr_3519 0.67 +2.1
Or see this region's nucleotide sequence