Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0356 and Psyr_0357 are separated by 3 nucleotides Psyr_0357 and Psyr_0358 overlap by 4 nucleotides
Psyr_0356: Psyr_0356 - L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein, at 381,987 to 382,730
_0356
Psyr_0357: Psyr_0357 - Diaminopimelate ABC transporter membrane protein / L-cystine ABC transporter membrane protein, at 382,734 to 383,402
_0357
Psyr_0358: Psyr_0358 - Diaminopimelate-binding protein / L-cystine-binding protein, at 383,399 to 384,196
_0358
Position (kb) 382
383
384 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 381.852 kb on + strand at 381.911 kb on + strand at 382.725 kb on + strand at 382.725 kb on + strand at 382.726 kb on - strand at 382.726 kb on - strand at 382.813 kb on + strand, within Psyr_0357 at 382.814 kb on - strand, within Psyr_0357 at 382.814 kb on - strand, within Psyr_0357 at 382.834 kb on + strand, within Psyr_0357 at 382.834 kb on + strand, within Psyr_0357 at 382.834 kb on + strand, within Psyr_0357 at 382.834 kb on + strand, within Psyr_0357 at 382.834 kb on + strand, within Psyr_0357 at 382.834 kb on + strand, within Psyr_0357 at 382.834 kb on + strand, within Psyr_0357 at 382.835 kb on - strand, within Psyr_0357 at 382.835 kb on - strand, within Psyr_0357 at 382.835 kb on - strand, within Psyr_0357 at 382.835 kb on - strand, within Psyr_0357 at 382.835 kb on - strand, within Psyr_0357 at 383.095 kb on + strand, within Psyr_0357 at 383.096 kb on - strand, within Psyr_0357 at 383.176 kb on + strand, within Psyr_0357 at 383.176 kb on + strand, within Psyr_0357 at 383.177 kb on - strand, within Psyr_0357 at 383.177 kb on - strand, within Psyr_0357 at 383.177 kb on - strand, within Psyr_0357 at 383.177 kb on - strand, within Psyr_0357 at 383.227 kb on + strand, within Psyr_0357 at 383.227 kb on + strand, within Psyr_0357 at 383.227 kb on + strand, within Psyr_0357 at 383.227 kb on + strand, within Psyr_0357 at 383.227 kb on + strand, within Psyr_0357 at 383.227 kb on + strand, within Psyr_0357 at 383.227 kb on + strand, within Psyr_0357 at 383.227 kb on + strand, within Psyr_0357 at 383.227 kb on + strand, within Psyr_0357 at 383.228 kb on - strand, within Psyr_0357 at 383.228 kb on - strand, within Psyr_0357 at 383.228 kb on - strand, within Psyr_0357 at 383.228 kb on - strand, within Psyr_0357 at 383.228 kb on - strand, within Psyr_0357 at 383.228 kb on - strand, within Psyr_0357 at 383.228 kb on - strand, within Psyr_0357 at 383.228 kb on - strand, within Psyr_0357 at 383.331 kb on + strand, within Psyr_0357 at 383.338 kb on + strand at 383.338 kb on + strand at 383.339 kb on - strand at 383.339 kb on - strand at 383.342 kb on - strand at 383.342 kb on - strand at 383.424 kb on + strand at 383.636 kb on + strand, within Psyr_0358 at 383.636 kb on + strand, within Psyr_0358 at 383.636 kb on + strand, within Psyr_0358 at 383.637 kb on - strand, within Psyr_0358 at 383.637 kb on - strand, within Psyr_0358 at 383.637 kb on - strand, within Psyr_0358 at 383.637 kb on - strand, within Psyr_0358 at 383.637 kb on - strand, within Psyr_0358 at 383.637 kb on - strand, within Psyr_0358 at 383.673 kb on + strand, within Psyr_0358 at 383.673 kb on + strand, within Psyr_0358 at 383.674 kb on - strand, within Psyr_0358 at 383.674 kb on - strand, within Psyr_0358 at 383.721 kb on + strand, within Psyr_0358 at 383.721 kb on + strand, within Psyr_0358 at 383.721 kb on + strand, within Psyr_0358 at 383.722 kb on - strand, within Psyr_0358 at 383.722 kb on - strand, within Psyr_0358 at 383.829 kb on + strand, within Psyr_0358 at 383.829 kb on + strand, within Psyr_0358 at 383.829 kb on + strand, within Psyr_0358 at 383.829 kb on + strand, within Psyr_0358 at 383.847 kb on + strand, within Psyr_0358 at 383.847 kb on + strand, within Psyr_0358 at 383.847 kb on + strand, within Psyr_0358 at 383.847 kb on + strand, within Psyr_0358 at 384.048 kb on + strand, within Psyr_0358 at 384.048 kb on + strand, within Psyr_0358 at 384.049 kb on - strand, within Psyr_0358 at 384.049 kb on - strand, within Psyr_0358 at 384.049 kb on - strand, within Psyr_0358 at 384.049 kb on - strand, within Psyr_0358 at 384.173 kb on - strand at 384.265 kb on + strand at 384.287 kb on + strand at 384.287 kb on + strand at 384.287 kb on + strand at 384.288 kb on - strand at 384.288 kb on - strand at 384.298 kb on + strand at 384.298 kb on + strand at 384.298 kb on + strand at 384.299 kb on - strand at 384.331 kb on + strand at 384.331 kb on + strand at 384.331 kb on + strand at 384.332 kb on - strand at 384.332 kb on - strand at 384.333 kb on + strand at 384.333 kb on + strand at 384.333 kb on + strand at 384.333 kb on + strand at 384.333 kb on + strand at 384.333 kb on + strand at 384.333 kb on + strand at 384.333 kb on + strand at 384.333 kb on + strand at 384.334 kb on - strand at 384.334 kb on - strand at 384.335 kb on + strand at 384.335 kb on + strand at 384.335 kb on + strand at 384.335 kb on + strand at 384.336 kb on - strand at 384.336 kb on - strand at 384.348 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 381,852 + -1.5 381,911 + +1.9 382,725 + +0.2 382,725 + -0.9 382,726 - +1.3 382,726 - -1.0 382,813 + Psyr_0357 0.12 -0.4 382,814 - Psyr_0357 0.12 +3.8 382,814 - Psyr_0357 0.12 -0.3 382,834 + Psyr_0357 0.15 +1.5 382,834 + Psyr_0357 0.15 -0.7 382,834 + Psyr_0357 0.15 -0.9 382,834 + Psyr_0357 0.15 -0.3 382,834 + Psyr_0357 0.15 +0.2 382,834 + Psyr_0357 0.15 -1.1 382,834 + Psyr_0357 0.15 +1.1 382,835 - Psyr_0357 0.15 -0.8 382,835 - Psyr_0357 0.15 -0.0 382,835 - Psyr_0357 0.15 -0.3 382,835 - Psyr_0357 0.15 -0.1 382,835 - Psyr_0357 0.15 -0.1 383,095 + Psyr_0357 0.54 +0.4 383,096 - Psyr_0357 0.54 -0.7 383,176 + Psyr_0357 0.66 +1.0 383,176 + Psyr_0357 0.66 -0.3 383,177 - Psyr_0357 0.66 -0.8 383,177 - Psyr_0357 0.66 -0.1 383,177 - Psyr_0357 0.66 -0.7 383,177 - Psyr_0357 0.66 -0.1 383,227 + Psyr_0357 0.74 -0.6 383,227 + Psyr_0357 0.74 -1.2 383,227 + Psyr_0357 0.74 -0.8 383,227 + Psyr_0357 0.74 -1.9 383,227 + Psyr_0357 0.74 +0.9 383,227 + Psyr_0357 0.74 +0.7 383,227 + Psyr_0357 0.74 -0.2 383,227 + Psyr_0357 0.74 -0.3 383,227 + Psyr_0357 0.74 +1.2 383,228 - Psyr_0357 0.74 +0.5 383,228 - Psyr_0357 0.74 +0.5 383,228 - Psyr_0357 0.74 +0.4 383,228 - Psyr_0357 0.74 +1.6 383,228 - Psyr_0357 0.74 +0.1 383,228 - Psyr_0357 0.74 +1.2 383,228 - Psyr_0357 0.74 -0.5 383,228 - Psyr_0357 0.74 +0.5 383,331 + Psyr_0357 0.89 -0.7 383,338 + +0.5 383,338 + +0.6 383,339 - +3.8 383,339 - -1.3 383,342 - +1.1 383,342 - +0.9 383,424 + +1.7 383,636 + Psyr_0358 0.30 -0.6 383,636 + Psyr_0358 0.30 -1.6 383,636 + Psyr_0358 0.30 +1.6 383,637 - Psyr_0358 0.30 +1.1 383,637 - Psyr_0358 0.30 +0.2 383,637 - Psyr_0358 0.30 +3.6 383,637 - Psyr_0358 0.30 +1.9 383,637 - Psyr_0358 0.30 +0.2 383,637 - Psyr_0358 0.30 +0.2 383,673 + Psyr_0358 0.34 +0.9 383,673 + Psyr_0358 0.34 -0.8 383,674 - Psyr_0358 0.34 -0.6 383,674 - Psyr_0358 0.34 -0.0 383,721 + Psyr_0358 0.40 +1.2 383,721 + Psyr_0358 0.40 +0.5 383,721 + Psyr_0358 0.40 +0.1 383,722 - Psyr_0358 0.40 -3.5 383,722 - Psyr_0358 0.40 -0.6 383,829 + Psyr_0358 0.54 -0.9 383,829 + Psyr_0358 0.54 -0.8 383,829 + Psyr_0358 0.54 +1.8 383,829 + Psyr_0358 0.54 -0.0 383,847 + Psyr_0358 0.56 +0.6 383,847 + Psyr_0358 0.56 -1.3 383,847 + Psyr_0358 0.56 -1.1 383,847 + Psyr_0358 0.56 -0.7 384,048 + Psyr_0358 0.81 -0.5 384,048 + Psyr_0358 0.81 -1.1 384,049 - Psyr_0358 0.81 -1.5 384,049 - Psyr_0358 0.81 +1.2 384,049 - Psyr_0358 0.81 -0.8 384,049 - Psyr_0358 0.81 -1.1 384,173 - +0.8 384,265 + -1.2 384,287 + +2.2 384,287 + -0.4 384,287 + +0.5 384,288 - -1.2 384,288 - -0.5 384,298 + +1.2 384,298 + +2.2 384,298 + +0.5 384,299 - -2.1 384,331 + +0.8 384,331 + +2.0 384,331 + -0.3 384,332 - -0.8 384,332 - +0.2 384,333 + -0.8 384,333 + -0.6 384,333 + +0.9 384,333 + -0.9 384,333 + +0.1 384,333 + +1.9 384,333 + +2.1 384,333 + +0.2 384,333 + -0.0 384,334 - -1.1 384,334 - -1.6 384,335 + +0.2 384,335 + -1.6 384,335 + -0.2 384,335 + -0.1 384,336 - +2.2 384,336 - -2.3 384,348 - -1.0
Or see this region's nucleotide sequence