Experiment: RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24250 and PS417_24255 are separated by 70 nucleotides PS417_24255 and PS417_24260 overlap by 4 nucleotides PS417_24260 and PS417_24265 are separated by 347 nucleotides
PS417_24250: PS417_24250 - hypothetical protein, at 5,260,811 to 5,261,167
_24250
PS417_24255: PS417_24255 - elongation factor GreAB, at 5,261,238 to 5,261,735
_24255
PS417_24260: PS417_24260 - glutamate dehydrogenase, at 5,261,732 to 5,263,069
_24260
PS417_24265: PS417_24265 - ABC transporter ATP-binding protein, at 5,263,417 to 5,265,081
_24265
Position (kb) 5261
5262
5263
5264 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5260.737 kb on + strand at 5260.737 kb on + strand at 5260.738 kb on - strand at 5260.769 kb on + strand at 5260.769 kb on + strand at 5260.769 kb on + strand at 5260.769 kb on + strand at 5260.770 kb on - strand at 5260.805 kb on + strand at 5261.194 kb on - strand at 5261.223 kb on + strand at 5261.223 kb on + strand at 5261.224 kb on - strand at 5261.382 kb on + strand, within PS417_24255 at 5261.382 kb on + strand, within PS417_24255 at 5261.383 kb on - strand, within PS417_24255 at 5261.383 kb on - strand, within PS417_24255 at 5261.454 kb on + strand, within PS417_24255 at 5261.516 kb on - strand, within PS417_24255 at 5261.516 kb on - strand, within PS417_24255 at 5261.733 kb on + strand at 5261.802 kb on + strand at 5261.803 kb on - strand at 5261.803 kb on - strand at 5261.803 kb on - strand at 5262.055 kb on + strand, within PS417_24260 at 5262.055 kb on + strand, within PS417_24260 at 5262.339 kb on + strand, within PS417_24260 at 5262.474 kb on + strand, within PS417_24260 at 5262.475 kb on - strand, within PS417_24260 at 5262.529 kb on - strand, within PS417_24260 at 5262.529 kb on - strand, within PS417_24260 at 5262.529 kb on - strand, within PS417_24260 at 5262.804 kb on + strand, within PS417_24260 at 5262.821 kb on - strand, within PS417_24260 at 5262.971 kb on + strand at 5262.971 kb on + strand at 5262.972 kb on - strand at 5262.972 kb on - strand at 5262.972 kb on - strand at 5262.981 kb on - strand at 5262.992 kb on + strand at 5263.187 kb on + strand at 5263.188 kb on - strand at 5263.192 kb on - strand at 5263.245 kb on - strand at 5263.245 kb on - strand at 5263.245 kb on - strand at 5263.248 kb on + strand at 5263.249 kb on - strand at 5263.249 kb on - strand at 5263.282 kb on + strand at 5263.282 kb on + strand at 5263.506 kb on + strand at 5263.798 kb on + strand, within PS417_24265 at 5263.802 kb on + strand, within PS417_24265 at 5263.802 kb on + strand, within PS417_24265 at 5263.802 kb on + strand, within PS417_24265 at 5263.803 kb on - strand, within PS417_24265 at 5263.823 kb on + strand, within PS417_24265 at 5263.823 kb on + strand, within PS417_24265 at 5263.824 kb on - strand, within PS417_24265
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x remove 5,260,737 + +0.6 5,260,737 + -0.8 5,260,738 - -0.1 5,260,769 + +0.0 5,260,769 + -0.3 5,260,769 + -0.2 5,260,769 + -0.4 5,260,770 - +0.9 5,260,805 + -0.3 5,261,194 - +0.0 5,261,223 + +0.7 5,261,223 + -0.2 5,261,224 - +0.0 5,261,382 + PS417_24255 0.29 -0.2 5,261,382 + PS417_24255 0.29 -0.3 5,261,383 - PS417_24255 0.29 +0.0 5,261,383 - PS417_24255 0.29 +0.8 5,261,454 + PS417_24255 0.43 +0.9 5,261,516 - PS417_24255 0.56 -0.5 5,261,516 - PS417_24255 0.56 +0.2 5,261,733 + +0.3 5,261,802 + -0.4 5,261,803 - -0.6 5,261,803 - -0.8 5,261,803 - -2.8 5,262,055 + PS417_24260 0.24 -0.4 5,262,055 + PS417_24260 0.24 +0.6 5,262,339 + PS417_24260 0.45 +0.0 5,262,474 + PS417_24260 0.55 -1.1 5,262,475 - PS417_24260 0.56 -0.5 5,262,529 - PS417_24260 0.60 +1.3 5,262,529 - PS417_24260 0.60 -0.4 5,262,529 - PS417_24260 0.60 -2.0 5,262,804 + PS417_24260 0.80 -2.1 5,262,821 - PS417_24260 0.81 -0.7 5,262,971 + -0.3 5,262,971 + +0.0 5,262,972 - +0.8 5,262,972 - -0.6 5,262,972 - +0.3 5,262,981 - +0.1 5,262,992 + +0.3 5,263,187 + +0.5 5,263,188 - +1.0 5,263,192 - -0.8 5,263,245 - -0.6 5,263,245 - +0.2 5,263,245 - -0.0 5,263,248 + +0.4 5,263,249 - -0.0 5,263,249 - +0.9 5,263,282 + -0.1 5,263,282 + +1.5 5,263,506 + +0.8 5,263,798 + PS417_24265 0.23 -0.1 5,263,802 + PS417_24265 0.23 -0.5 5,263,802 + PS417_24265 0.23 +0.4 5,263,802 + PS417_24265 0.23 +0.3 5,263,803 - PS417_24265 0.23 +0.6 5,263,823 + PS417_24265 0.24 -0.0 5,263,823 + PS417_24265 0.24 +0.2 5,263,824 - PS417_24265 0.24 +0.4
Or see this region's nucleotide sequence