Experiment: Mannobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3640 and Atu3641 overlap by 4 nucleotides Atu3641 and Atu3642 are separated by 13 nucleotides
Atu3640: Atu3640 - hypothetical protein, at 692,241 to 693,821
Atu3640
Atu3641: Atu3641 - hypothetical protein, at 693,818 to 694,927
Atu3641
Atu3642: Atu3642 - vgrG protein, at 694,941 to 697,205
Atu3642
Position (kb) 693
694
695 Strain fitness (log2 ratio) -1
0
1
2 at 692.825 kb on - strand, within Atu3640 at 692.851 kb on + strand, within Atu3640 at 692.875 kb on + strand, within Atu3640 at 692.877 kb on - strand, within Atu3640 at 692.891 kb on - strand, within Atu3640 at 692.951 kb on - strand, within Atu3640 at 693.221 kb on + strand, within Atu3640 at 693.246 kb on + strand, within Atu3640 at 693.246 kb on + strand, within Atu3640 at 693.246 kb on + strand, within Atu3640 at 693.264 kb on + strand, within Atu3640 at 693.312 kb on - strand, within Atu3640 at 693.362 kb on + strand, within Atu3640 at 693.370 kb on - strand, within Atu3640 at 693.451 kb on + strand, within Atu3640 at 693.451 kb on + strand, within Atu3640 at 693.457 kb on - strand, within Atu3640 at 693.476 kb on - strand, within Atu3640 at 693.481 kb on - strand, within Atu3640 at 693.501 kb on + strand, within Atu3640 at 693.557 kb on - strand, within Atu3640 at 693.582 kb on - strand, within Atu3640 at 693.588 kb on - strand, within Atu3640 at 693.603 kb on - strand, within Atu3640 at 693.652 kb on + strand, within Atu3640 at 693.706 kb on - strand at 693.723 kb on + strand at 693.780 kb on + strand at 693.875 kb on - strand at 693.877 kb on + strand at 693.877 kb on + strand at 693.885 kb on - strand at 693.934 kb on + strand, within Atu3641 at 693.934 kb on - strand, within Atu3641 at 693.934 kb on - strand, within Atu3641 at 693.975 kb on + strand, within Atu3641 at 694.063 kb on + strand, within Atu3641 at 694.101 kb on + strand, within Atu3641 at 694.109 kb on - strand, within Atu3641 at 694.109 kb on - strand, within Atu3641 at 694.109 kb on - strand, within Atu3641 at 694.215 kb on - strand, within Atu3641 at 694.253 kb on - strand, within Atu3641 at 694.256 kb on + strand, within Atu3641 at 694.321 kb on - strand, within Atu3641 at 694.373 kb on + strand, within Atu3641 at 694.443 kb on - strand, within Atu3641 at 694.539 kb on - strand, within Atu3641 at 694.685 kb on + strand, within Atu3641 at 694.693 kb on - strand, within Atu3641 at 694.743 kb on - strand, within Atu3641 at 694.809 kb on + strand, within Atu3641 at 694.809 kb on + strand, within Atu3641 at 694.812 kb on - strand, within Atu3641 at 694.834 kb on - strand at 694.890 kb on - strand at 694.913 kb on + strand at 694.913 kb on + strand at 694.993 kb on + strand at 694.995 kb on + strand at 695.002 kb on + strand at 695.081 kb on - strand at 695.092 kb on + strand at 695.154 kb on + strand at 695.168 kb on + strand, within Atu3642 at 695.196 kb on - strand, within Atu3642 at 695.381 kb on - strand, within Atu3642 at 695.408 kb on - strand, within Atu3642 at 695.410 kb on - strand, within Atu3642 at 695.413 kb on - strand, within Atu3642 at 695.421 kb on + strand, within Atu3642 at 695.429 kb on - strand, within Atu3642 at 695.429 kb on - strand, within Atu3642 at 695.858 kb on + strand, within Atu3642
Per-strain Table
Position Strand Gene LocusTag Fraction Mannobiose (C) remove 692,825 - Atu3640 0.37 +0.3 692,851 + Atu3640 0.39 -0.4 692,875 + Atu3640 0.40 -0.4 692,877 - Atu3640 0.40 +0.4 692,891 - Atu3640 0.41 +0.6 692,951 - Atu3640 0.45 +0.3 693,221 + Atu3640 0.62 +0.2 693,246 + Atu3640 0.64 -0.2 693,246 + Atu3640 0.64 -0.1 693,246 + Atu3640 0.64 -0.8 693,264 + Atu3640 0.65 -0.9 693,312 - Atu3640 0.68 +0.1 693,362 + Atu3640 0.71 -0.0 693,370 - Atu3640 0.71 -0.3 693,451 + Atu3640 0.77 -0.7 693,451 + Atu3640 0.77 +0.7 693,457 - Atu3640 0.77 +0.1 693,476 - Atu3640 0.78 -0.2 693,481 - Atu3640 0.78 -1.2 693,501 + Atu3640 0.80 -0.9 693,557 - Atu3640 0.83 -0.1 693,582 - Atu3640 0.85 +0.6 693,588 - Atu3640 0.85 +0.7 693,603 - Atu3640 0.86 -0.3 693,652 + Atu3640 0.89 -0.2 693,706 - +1.0 693,723 + +1.5 693,780 + +0.1 693,875 - +0.2 693,877 + +0.1 693,877 + -1.6 693,885 - +0.1 693,934 + Atu3641 0.10 +0.8 693,934 - Atu3641 0.10 -0.0 693,934 - Atu3641 0.10 +1.8 693,975 + Atu3641 0.14 +0.9 694,063 + Atu3641 0.22 -0.2 694,101 + Atu3641 0.25 -0.1 694,109 - Atu3641 0.26 +0.2 694,109 - Atu3641 0.26 +0.5 694,109 - Atu3641 0.26 +0.1 694,215 - Atu3641 0.36 +0.8 694,253 - Atu3641 0.39 +0.5 694,256 + Atu3641 0.39 -0.0 694,321 - Atu3641 0.45 +0.1 694,373 + Atu3641 0.50 +0.3 694,443 - Atu3641 0.56 +0.7 694,539 - Atu3641 0.65 +0.2 694,685 + Atu3641 0.78 +0.4 694,693 - Atu3641 0.79 +0.2 694,743 - Atu3641 0.83 +0.1 694,809 + Atu3641 0.89 -0.3 694,809 + Atu3641 0.89 -1.7 694,812 - Atu3641 0.90 +0.3 694,834 - -0.3 694,890 - -1.4 694,913 + -0.3 694,913 + -0.4 694,993 + +1.7 694,995 + +0.0 695,002 + +0.1 695,081 - -0.2 695,092 + +0.0 695,154 + -0.2 695,168 + Atu3642 0.10 -0.2 695,196 - Atu3642 0.11 +0.0 695,381 - Atu3642 0.19 -0.4 695,408 - Atu3642 0.21 +0.7 695,410 - Atu3642 0.21 +0.3 695,413 - Atu3642 0.21 -0.2 695,421 + Atu3642 0.21 +0.2 695,429 - Atu3642 0.22 +0.2 695,429 - Atu3642 0.22 -0.5 695,858 + Atu3642 0.40 -0.1
Or see this region's nucleotide sequence