Experiment: Mannobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3351 and Atu3352 are separated by 143 nucleotides Atu3352 and Atu3353 are separated by 304 nucleotides
Atu3351: Atu3351 - sugar ABC transporter permease, at 384,551 to 385,453
Atu3351
Atu3352: Atu3352 - sugar ABC transporter substrate-binding protein, at 385,597 to 386,829
Atu3352
Atu3353: Atu3353 - mannose-1-phosphate guanylyltransferase, at 387,134 to 388,564
Atu3353
Position (kb) 385
386
387 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 384.626 kb on + strand at 384.636 kb on + strand at 384.641 kb on + strand at 384.644 kb on - strand, within Atu3351 at 384.646 kb on + strand, within Atu3351 at 384.720 kb on + strand, within Atu3351 at 384.773 kb on + strand, within Atu3351 at 384.823 kb on + strand, within Atu3351 at 384.823 kb on + strand, within Atu3351 at 384.823 kb on + strand, within Atu3351 at 384.831 kb on - strand, within Atu3351 at 384.928 kb on + strand, within Atu3351 at 384.955 kb on - strand, within Atu3351 at 384.973 kb on + strand, within Atu3351 at 385.231 kb on + strand, within Atu3351 at 385.239 kb on - strand, within Atu3351 at 385.246 kb on + strand, within Atu3351 at 385.249 kb on - strand, within Atu3351 at 385.268 kb on - strand, within Atu3351 at 385.268 kb on - strand, within Atu3351 at 385.340 kb on - strand, within Atu3351 at 385.381 kb on - strand at 385.438 kb on + strand at 385.446 kb on - strand at 385.525 kb on - strand at 385.549 kb on - strand at 385.724 kb on + strand, within Atu3352 at 385.724 kb on + strand, within Atu3352 at 385.727 kb on - strand, within Atu3352 at 385.732 kb on - strand, within Atu3352 at 385.737 kb on - strand, within Atu3352 at 385.744 kb on - strand, within Atu3352 at 385.750 kb on - strand, within Atu3352 at 385.785 kb on - strand, within Atu3352 at 385.785 kb on - strand, within Atu3352 at 385.795 kb on - strand, within Atu3352 at 385.795 kb on - strand, within Atu3352 at 385.891 kb on - strand, within Atu3352 at 385.981 kb on + strand, within Atu3352 at 385.981 kb on + strand, within Atu3352 at 386.039 kb on + strand, within Atu3352 at 386.047 kb on - strand, within Atu3352 at 386.047 kb on - strand, within Atu3352 at 386.047 kb on - strand, within Atu3352 at 386.047 kb on - strand, within Atu3352 at 386.355 kb on + strand, within Atu3352 at 386.466 kb on + strand, within Atu3352 at 386.487 kb on + strand, within Atu3352 at 386.575 kb on - strand, within Atu3352 at 386.611 kb on + strand, within Atu3352 at 386.614 kb on + strand, within Atu3352 at 386.623 kb on + strand, within Atu3352 at 386.698 kb on - strand, within Atu3352 at 386.756 kb on - strand at 386.982 kb on - strand at 387.029 kb on - strand at 387.118 kb on + strand at 387.129 kb on + strand at 387.134 kb on + strand at 387.319 kb on - strand, within Atu3353 at 387.364 kb on - strand, within Atu3353 at 387.414 kb on + strand, within Atu3353 at 387.429 kb on + strand, within Atu3353 at 387.442 kb on - strand, within Atu3353 at 387.444 kb on + strand, within Atu3353 at 387.444 kb on + strand, within Atu3353 at 387.452 kb on - strand, within Atu3353 at 387.581 kb on - strand, within Atu3353 at 387.591 kb on + strand, within Atu3353 at 387.736 kb on + strand, within Atu3353
Per-strain Table
Position Strand Gene LocusTag Fraction Mannobiose (C) remove 384,626 + -2.6 384,636 + -0.9 384,641 + -1.3 384,644 - Atu3351 0.10 -2.0 384,646 + Atu3351 0.11 -2.7 384,720 + Atu3351 0.19 -2.9 384,773 + Atu3351 0.25 -1.4 384,823 + Atu3351 0.30 -1.8 384,823 + Atu3351 0.30 -1.4 384,823 + Atu3351 0.30 -1.9 384,831 - Atu3351 0.31 -1.2 384,928 + Atu3351 0.42 -2.1 384,955 - Atu3351 0.45 -2.8 384,973 + Atu3351 0.47 -2.1 385,231 + Atu3351 0.75 -1.9 385,239 - Atu3351 0.76 -1.3 385,246 + Atu3351 0.77 -1.9 385,249 - Atu3351 0.77 -3.9 385,268 - Atu3351 0.79 -0.6 385,268 - Atu3351 0.79 -0.8 385,340 - Atu3351 0.87 -1.5 385,381 - -1.8 385,438 + -0.9 385,446 - -2.0 385,525 - -1.6 385,549 - -0.7 385,724 + Atu3352 0.10 -3.0 385,724 + Atu3352 0.10 -2.3 385,727 - Atu3352 0.11 -2.1 385,732 - Atu3352 0.11 -1.2 385,737 - Atu3352 0.11 -1.4 385,744 - Atu3352 0.12 -2.1 385,750 - Atu3352 0.12 -1.8 385,785 - Atu3352 0.15 -0.8 385,785 - Atu3352 0.15 -1.6 385,795 - Atu3352 0.16 -2.6 385,795 - Atu3352 0.16 -1.7 385,891 - Atu3352 0.24 -2.6 385,981 + Atu3352 0.31 -1.2 385,981 + Atu3352 0.31 -1.6 386,039 + Atu3352 0.36 -1.2 386,047 - Atu3352 0.36 -1.2 386,047 - Atu3352 0.36 -2.6 386,047 - Atu3352 0.36 -0.2 386,047 - Atu3352 0.36 -1.6 386,355 + Atu3352 0.61 -1.5 386,466 + Atu3352 0.70 -2.3 386,487 + Atu3352 0.72 -2.6 386,575 - Atu3352 0.79 -1.9 386,611 + Atu3352 0.82 -1.4 386,614 + Atu3352 0.82 -2.8 386,623 + Atu3352 0.83 -1.6 386,698 - Atu3352 0.89 -1.7 386,756 - -0.9 386,982 - +0.2 387,029 - -0.0 387,118 + +2.0 387,129 + -0.3 387,134 + -0.2 387,319 - Atu3353 0.13 -1.5 387,364 - Atu3353 0.16 -0.1 387,414 + Atu3353 0.20 -0.3 387,429 + Atu3353 0.21 -1.0 387,442 - Atu3353 0.22 -1.1 387,444 + Atu3353 0.22 -0.9 387,444 + Atu3353 0.22 -1.0 387,452 - Atu3353 0.22 -2.2 387,581 - Atu3353 0.31 +0.1 387,591 + Atu3353 0.32 +0.1 387,736 + Atu3353 0.42 -1.2
Or see this region's nucleotide sequence