Strain Fitness in Agrobacterium fabrum C58 around Atu0571

Experiment: Mannobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0570 and Atu0571 overlap by 4 nucleotidesAtu0571 and Atu0572 are separated by 70 nucleotidesAtu0572 and Atu0573 are separated by 282 nucleotides Atu0570: Atu0570 - Chemotaxis protein, at 554,738 to 556,018 Atu0570 Atu0571: Atu0571 - chemotaxis MotD protein, at 556,015 to 557,364 Atu0571 Atu0572: Atu0572 - hypothetical protein, at 557,435 to 557,878 Atu0572 Atu0573: Atu0573 - transcriptional regulator, at 558,161 to 558,832 Atu0573 Position (kb) 556 557 558Strain fitness (log2 ratio) -1 0 1 2at 555.042 kb on + strand, within Atu0570at 555.042 kb on + strand, within Atu0570at 555.050 kb on - strand, within Atu0570at 555.104 kb on - strand, within Atu0570at 555.145 kb on + strand, within Atu0570at 555.184 kb on + strand, within Atu0570at 555.192 kb on - strand, within Atu0570at 555.261 kb on + strand, within Atu0570at 555.280 kb on + strand, within Atu0570at 555.340 kb on - strand, within Atu0570at 555.368 kb on + strand, within Atu0570at 555.373 kb on + strand, within Atu0570at 555.383 kb on - strand, within Atu0570at 555.479 kb on + strand, within Atu0570at 555.511 kb on + strand, within Atu0570at 555.511 kb on + strand, within Atu0570at 555.616 kb on + strand, within Atu0570at 555.632 kb on - strand, within Atu0570at 555.663 kb on + strand, within Atu0570at 555.690 kb on + strand, within Atu0570at 555.743 kb on + strand, within Atu0570at 555.744 kb on - strand, within Atu0570at 555.744 kb on - strand, within Atu0570at 555.753 kb on + strand, within Atu0570at 555.822 kb on - strand, within Atu0570at 555.841 kb on - strand, within Atu0570at 556.089 kb on + strandat 556.194 kb on + strand, within Atu0571at 556.349 kb on - strand, within Atu0571at 556.440 kb on + strand, within Atu0571at 556.440 kb on + strand, within Atu0571at 556.448 kb on - strand, within Atu0571at 556.448 kb on - strand, within Atu0571at 556.448 kb on - strand, within Atu0571at 556.448 kb on - strand, within Atu0571at 556.487 kb on - strand, within Atu0571at 556.548 kb on + strand, within Atu0571at 556.556 kb on - strand, within Atu0571at 556.566 kb on - strand, within Atu0571at 556.577 kb on - strand, within Atu0571at 556.587 kb on + strand, within Atu0571at 556.590 kb on - strand, within Atu0571at 556.611 kb on + strand, within Atu0571at 556.710 kb on + strand, within Atu0571at 556.787 kb on - strand, within Atu0571at 556.872 kb on + strand, within Atu0571at 556.872 kb on + strand, within Atu0571at 556.880 kb on - strand, within Atu0571at 556.880 kb on - strand, within Atu0571at 556.880 kb on - strand, within Atu0571at 556.892 kb on - strand, within Atu0571at 556.902 kb on + strand, within Atu0571at 556.915 kb on + strand, within Atu0571at 556.915 kb on + strand, within Atu0571at 556.920 kb on + strand, within Atu0571at 556.923 kb on - strand, within Atu0571at 556.940 kb on + strand, within Atu0571at 556.946 kb on + strand, within Atu0571at 556.954 kb on - strand, within Atu0571at 557.106 kb on + strand, within Atu0571at 557.143 kb on - strand, within Atu0571at 557.158 kb on + strand, within Atu0571at 557.305 kb on + strandat 557.313 kb on - strandat 557.342 kb on - strandat 557.354 kb on - strandat 557.385 kb on + strandat 557.385 kb on + strandat 557.385 kb on + strandat 557.385 kb on + strandat 557.393 kb on - strandat 557.393 kb on - strandat 557.397 kb on + strandat 557.405 kb on + strandat 557.505 kb on - strand, within Atu0572at 557.541 kb on + strand, within Atu0572at 557.757 kb on + strand, within Atu0572at 558.190 kb on + strandat 558.198 kb on - strandat 558.198 kb on - strandat 558.271 kb on + strand, within Atu0573at 558.279 kb on - strand, within Atu0573

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannobiose (C)
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555,042 + Atu0570 0.24 +0.4
555,042 + Atu0570 0.24 +1.1
555,050 - Atu0570 0.24 +0.2
555,104 - Atu0570 0.29 +0.7
555,145 + Atu0570 0.32 +0.8
555,184 + Atu0570 0.35 +0.5
555,192 - Atu0570 0.35 +0.6
555,261 + Atu0570 0.41 +0.9
555,280 + Atu0570 0.42 +0.2
555,340 - Atu0570 0.47 +0.8
555,368 + Atu0570 0.49 +0.5
555,373 + Atu0570 0.50 +0.4
555,383 - Atu0570 0.50 +0.4
555,479 + Atu0570 0.58 -0.2
555,511 + Atu0570 0.60 +0.5
555,511 + Atu0570 0.60 +0.5
555,616 + Atu0570 0.69 +0.4
555,632 - Atu0570 0.70 +0.6
555,663 + Atu0570 0.72 +1.5
555,690 + Atu0570 0.74 +0.5
555,743 + Atu0570 0.78 +0.5
555,744 - Atu0570 0.79 -0.1
555,744 - Atu0570 0.79 +0.4
555,753 + Atu0570 0.79 +0.4
555,822 - Atu0570 0.85 +0.7
555,841 - Atu0570 0.86 +1.0
556,089 + +0.4
556,194 + Atu0571 0.13 +0.5
556,349 - Atu0571 0.25 +0.6
556,440 + Atu0571 0.31 -0.6
556,440 + Atu0571 0.31 -0.1
556,448 - Atu0571 0.32 +0.6
556,448 - Atu0571 0.32 +0.4
556,448 - Atu0571 0.32 +0.9
556,448 - Atu0571 0.32 -1.6
556,487 - Atu0571 0.35 +0.4
556,548 + Atu0571 0.39 +0.4
556,556 - Atu0571 0.40 +1.0
556,566 - Atu0571 0.41 -0.6
556,577 - Atu0571 0.42 +0.7
556,587 + Atu0571 0.42 -0.2
556,590 - Atu0571 0.43 +0.5
556,611 + Atu0571 0.44 +0.6
556,710 + Atu0571 0.51 +0.5
556,787 - Atu0571 0.57 +0.8
556,872 + Atu0571 0.63 +1.1
556,872 + Atu0571 0.63 +0.2
556,880 - Atu0571 0.64 +0.1
556,880 - Atu0571 0.64 +0.3
556,880 - Atu0571 0.64 +0.2
556,892 - Atu0571 0.65 +1.0
556,902 + Atu0571 0.66 -0.1
556,915 + Atu0571 0.67 -0.6
556,915 + Atu0571 0.67 +1.7
556,920 + Atu0571 0.67 +0.4
556,923 - Atu0571 0.67 +0.3
556,940 + Atu0571 0.69 -0.1
556,946 + Atu0571 0.69 +0.7
556,954 - Atu0571 0.70 +0.5
557,106 + Atu0571 0.81 +0.1
557,143 - Atu0571 0.84 +0.2
557,158 + Atu0571 0.85 +0.8
557,305 + +1.9
557,313 - +0.5
557,342 - +0.4
557,354 - +1.5
557,385 + +0.2
557,385 + +1.7
557,385 + +0.2
557,385 + +0.5
557,393 - +0.0
557,393 - +0.4
557,397 + +0.3
557,405 + +0.2
557,505 - Atu0572 0.16 -0.5
557,541 + Atu0572 0.24 +0.1
557,757 + Atu0572 0.73 -1.4
558,190 + +1.3
558,198 - +1.4
558,198 - +1.0
558,271 + Atu0573 0.16 +1.3
558,279 - Atu0573 0.18 +0.1

Or see this region's nucleotide sequence