Experiment: Mannobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0567 and Atu0568 are separated by 279 nucleotides Atu0568 and Atu0569 overlap by 4 nucleotides
Atu0567: Atu0567 - flagellin protein FlaD, at 551,215 to 552,507
Atu0567
Atu0568: Atu0568 - hypothetical protein, at 552,787 to 553,443
Atu0568
Atu0569: Atu0569 - flagellar motor protein, PAL/OmpA family, at 553,440 to 554,741
Atu0569
Position (kb) 552
553
554 Strain fitness (log2 ratio) -2
-1
0
1
2 at 551.840 kb on + strand, within Atu0567 at 551.872 kb on + strand, within Atu0567 at 551.889 kb on + strand, within Atu0567 at 551.889 kb on + strand, within Atu0567 at 551.890 kb on - strand, within Atu0567 at 551.955 kb on + strand, within Atu0567 at 552.060 kb on - strand, within Atu0567 at 552.093 kb on + strand, within Atu0567 at 552.093 kb on + strand, within Atu0567 at 552.189 kb on - strand, within Atu0567 at 552.189 kb on - strand, within Atu0567 at 552.211 kb on + strand, within Atu0567 at 552.211 kb on + strand, within Atu0567 at 552.219 kb on - strand, within Atu0567 at 552.223 kb on - strand, within Atu0567 at 552.294 kb on - strand, within Atu0567 at 552.307 kb on - strand, within Atu0567 at 552.323 kb on - strand, within Atu0567 at 552.367 kb on + strand, within Atu0567 at 552.399 kb on - strand at 552.414 kb on + strand at 552.422 kb on - strand at 552.574 kb on - strand at 552.583 kb on + strand at 552.671 kb on - strand at 552.671 kb on - strand at 552.696 kb on + strand at 552.777 kb on - strand at 552.784 kb on + strand at 552.792 kb on - strand at 552.828 kb on + strand at 552.828 kb on + strand at 552.955 kb on - strand, within Atu0568 at 553.035 kb on - strand, within Atu0568 at 553.103 kb on + strand, within Atu0568 at 553.218 kb on + strand, within Atu0568 at 553.226 kb on - strand, within Atu0568 at 553.243 kb on - strand, within Atu0568 at 553.307 kb on - strand, within Atu0568 at 553.307 kb on - strand, within Atu0568 at 553.307 kb on - strand, within Atu0568 at 553.307 kb on - strand, within Atu0568 at 553.377 kb on + strand, within Atu0568 at 553.377 kb on + strand, within Atu0568 at 553.496 kb on + strand at 553.585 kb on + strand, within Atu0569 at 553.595 kb on + strand, within Atu0569 at 553.598 kb on - strand, within Atu0569 at 553.616 kb on + strand, within Atu0569 at 553.648 kb on + strand, within Atu0569 at 553.648 kb on + strand, within Atu0569 at 553.656 kb on - strand, within Atu0569 at 553.766 kb on - strand, within Atu0569 at 553.782 kb on + strand, within Atu0569 at 553.796 kb on - strand, within Atu0569 at 553.805 kb on - strand, within Atu0569 at 553.847 kb on + strand, within Atu0569 at 553.855 kb on - strand, within Atu0569 at 553.892 kb on + strand, within Atu0569 at 553.910 kb on + strand, within Atu0569 at 554.048 kb on - strand, within Atu0569 at 554.088 kb on + strand, within Atu0569 at 554.095 kb on - strand, within Atu0569 at 554.124 kb on + strand, within Atu0569 at 554.212 kb on + strand, within Atu0569 at 554.237 kb on + strand, within Atu0569 at 554.285 kb on + strand, within Atu0569 at 554.286 kb on + strand, within Atu0569
Per-strain Table
Position Strand Gene LocusTag Fraction Mannobiose (C) remove 551,840 + Atu0567 0.48 +0.0 551,872 + Atu0567 0.51 -0.9 551,889 + Atu0567 0.52 +1.9 551,889 + Atu0567 0.52 -2.4 551,890 - Atu0567 0.52 +0.1 551,955 + Atu0567 0.57 -0.2 552,060 - Atu0567 0.65 +0.5 552,093 + Atu0567 0.68 -0.4 552,093 + Atu0567 0.68 +0.1 552,189 - Atu0567 0.75 -0.1 552,189 - Atu0567 0.75 +0.6 552,211 + Atu0567 0.77 +0.3 552,211 + Atu0567 0.77 -0.3 552,219 - Atu0567 0.78 -0.9 552,223 - Atu0567 0.78 +0.5 552,294 - Atu0567 0.83 +0.8 552,307 - Atu0567 0.84 +0.2 552,323 - Atu0567 0.86 -0.1 552,367 + Atu0567 0.89 -0.0 552,399 - +0.1 552,414 + -0.4 552,422 - +0.3 552,574 - -0.4 552,583 + +0.2 552,671 - +0.1 552,671 - -0.1 552,696 + -0.1 552,777 - -0.1 552,784 + +0.7 552,792 - +0.5 552,828 + +0.8 552,828 + +0.2 552,955 - Atu0568 0.26 +2.5 553,035 - Atu0568 0.38 -0.4 553,103 + Atu0568 0.48 +0.3 553,218 + Atu0568 0.66 -0.2 553,226 - Atu0568 0.67 -0.3 553,243 - Atu0568 0.69 +0.5 553,307 - Atu0568 0.79 +0.6 553,307 - Atu0568 0.79 -0.8 553,307 - Atu0568 0.79 +0.5 553,307 - Atu0568 0.79 +0.6 553,377 + Atu0568 0.90 +0.4 553,377 + Atu0568 0.90 +0.5 553,496 + +0.5 553,585 + Atu0569 0.11 -0.1 553,595 + Atu0569 0.12 +0.6 553,598 - Atu0569 0.12 +0.5 553,616 + Atu0569 0.14 -0.1 553,648 + Atu0569 0.16 +0.5 553,648 + Atu0569 0.16 +0.8 553,656 - Atu0569 0.17 +0.4 553,766 - Atu0569 0.25 +0.5 553,782 + Atu0569 0.26 +0.3 553,796 - Atu0569 0.27 +0.5 553,805 - Atu0569 0.28 +0.4 553,847 + Atu0569 0.31 +1.1 553,855 - Atu0569 0.32 +1.1 553,892 + Atu0569 0.35 -0.1 553,910 + Atu0569 0.36 +0.5 554,048 - Atu0569 0.47 +0.7 554,088 + Atu0569 0.50 +0.9 554,095 - Atu0569 0.50 +0.7 554,124 + Atu0569 0.53 +0.6 554,212 + Atu0569 0.59 +0.9 554,237 + Atu0569 0.61 +0.5 554,285 + Atu0569 0.65 +0.3 554,286 + Atu0569 0.65 +0.2
Or see this region's nucleotide sequence