Strain Fitness in Agrobacterium fabrum C58 around Atu0561

Experiment: Mannobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0560 and Atu0561 are separated by 2 nucleotidesAtu0561 and Atu0562 are separated by 63 nucleotidesAtu0562 and Atu0563 are separated by 27 nucleotides Atu0560: Atu0560 - flagellar motor protein, at 545,748 to 546,620 Atu0560 Atu0561: Atu0561 - flagellar motor switch protein, at 546,623 to 547,582 Atu0561 Atu0562: Atu0562 - flagellar motor switch protein FliN, at 547,646 to 548,185 Atu0562 Atu0563: Atu0563 - flagellar motor switch protein FliG, at 548,213 to 549,256 Atu0563 Position (kb) 546 547 548Strain fitness (log2 ratio) -1 0 1 2at 545.653 kb on + strandat 545.653 kb on + strandat 545.653 kb on + strandat 545.665 kb on + strandat 545.672 kb on + strandat 545.727 kb on - strandat 545.727 kb on - strandat 545.729 kb on + strandat 545.729 kb on + strandat 545.735 kb on - strandat 545.774 kb on - strandat 545.817 kb on + strandat 545.887 kb on + strand, within Atu0560at 545.895 kb on - strand, within Atu0560at 545.904 kb on + strand, within Atu0560at 545.930 kb on + strand, within Atu0560at 545.993 kb on + strand, within Atu0560at 546.016 kb on + strand, within Atu0560at 546.227 kb on + strand, within Atu0560at 546.299 kb on + strand, within Atu0560at 546.299 kb on + strand, within Atu0560at 546.363 kb on - strand, within Atu0560at 546.363 kb on - strand, within Atu0560at 546.377 kb on + strand, within Atu0560at 546.387 kb on + strand, within Atu0560at 546.395 kb on - strand, within Atu0560at 546.420 kb on + strand, within Atu0560at 546.425 kb on + strand, within Atu0560at 546.425 kb on + strand, within Atu0560at 546.425 kb on + strand, within Atu0560at 546.433 kb on - strand, within Atu0560at 546.433 kb on - strand, within Atu0560at 546.433 kb on - strand, within Atu0560at 546.444 kb on + strand, within Atu0560at 546.444 kb on + strand, within Atu0560at 546.455 kb on + strand, within Atu0560at 546.661 kb on - strandat 546.685 kb on + strandat 546.717 kb on - strandat 546.732 kb on - strand, within Atu0561at 546.992 kb on + strand, within Atu0561at 547.037 kb on + strand, within Atu0561at 547.045 kb on - strand, within Atu0561at 547.058 kb on + strand, within Atu0561at 547.058 kb on + strand, within Atu0561at 547.066 kb on - strand, within Atu0561at 547.097 kb on - strand, within Atu0561at 547.112 kb on - strand, within Atu0561at 547.230 kb on - strand, within Atu0561at 547.243 kb on + strand, within Atu0561at 547.251 kb on - strand, within Atu0561at 547.251 kb on - strand, within Atu0561at 547.335 kb on - strand, within Atu0561at 547.335 kb on - strand, within Atu0561at 547.347 kb on + strand, within Atu0561at 547.347 kb on + strand, within Atu0561at 547.473 kb on + strand, within Atu0561at 547.473 kb on + strand, within Atu0561at 547.473 kb on + strand, within Atu0561at 547.578 kb on + strandat 547.578 kb on + strandat 547.632 kb on + strandat 547.728 kb on - strand, within Atu0562at 547.823 kb on + strand, within Atu0562at 547.909 kb on + strand, within Atu0562at 547.909 kb on - strand, within Atu0562at 548.050 kb on + strand, within Atu0562at 548.094 kb on + strand, within Atu0562at 548.117 kb on + strand, within Atu0562at 548.204 kb on + strandat 548.207 kb on - strandat 548.299 kb on + strandat 548.369 kb on + strand, within Atu0563at 548.410 kb on - strand, within Atu0563at 548.471 kb on - strand, within Atu0563at 548.497 kb on + strand, within Atu0563at 548.502 kb on + strand, within Atu0563at 548.510 kb on + strand, within Atu0563at 548.510 kb on - strand, within Atu0563at 548.510 kb on - strand, within Atu0563at 548.520 kb on - strand, within Atu0563at 548.542 kb on + strand, within Atu0563at 548.564 kb on + strand, within Atu0563at 548.578 kb on + strand, within Atu0563

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannobiose (C)
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545,653 + -0.3
545,653 + +0.6
545,653 + +0.6
545,665 + +0.2
545,672 + -0.4
545,727 - +0.9
545,727 - +0.8
545,729 + +0.3
545,729 + +0.8
545,735 - +0.2
545,774 - +0.2
545,817 + +0.2
545,887 + Atu0560 0.16 -0.2
545,895 - Atu0560 0.17 -0.1
545,904 + Atu0560 0.18 +0.9
545,930 + Atu0560 0.21 +0.3
545,993 + Atu0560 0.28 +0.4
546,016 + Atu0560 0.31 +0.4
546,227 + Atu0560 0.55 +0.7
546,299 + Atu0560 0.63 +0.6
546,299 + Atu0560 0.63 +0.1
546,363 - Atu0560 0.70 +0.5
546,363 - Atu0560 0.70 +0.6
546,377 + Atu0560 0.72 +0.5
546,387 + Atu0560 0.73 +0.0
546,395 - Atu0560 0.74 +0.3
546,420 + Atu0560 0.77 +0.4
546,425 + Atu0560 0.78 +0.9
546,425 + Atu0560 0.78 -0.1
546,425 + Atu0560 0.78 +0.0
546,433 - Atu0560 0.78 +0.6
546,433 - Atu0560 0.78 +0.3
546,433 - Atu0560 0.78 +0.5
546,444 + Atu0560 0.80 +0.4
546,444 + Atu0560 0.80 +0.4
546,455 + Atu0560 0.81 +0.5
546,661 - +0.3
546,685 + +0.2
546,717 - +0.6
546,732 - Atu0561 0.11 -0.2
546,992 + Atu0561 0.38 -0.1
547,037 + Atu0561 0.43 -0.4
547,045 - Atu0561 0.44 -0.1
547,058 + Atu0561 0.45 -0.1
547,058 + Atu0561 0.45 +0.2
547,066 - Atu0561 0.46 +0.7
547,097 - Atu0561 0.49 +1.2
547,112 - Atu0561 0.51 +1.3
547,230 - Atu0561 0.63 -0.4
547,243 + Atu0561 0.65 +0.4
547,251 - Atu0561 0.65 +0.0
547,251 - Atu0561 0.65 +0.5
547,335 - Atu0561 0.74 +0.5
547,335 - Atu0561 0.74 +0.6
547,347 + Atu0561 0.75 +0.1
547,347 + Atu0561 0.75 +0.4
547,473 + Atu0561 0.89 +0.0
547,473 + Atu0561 0.89 +0.9
547,473 + Atu0561 0.89 +0.4
547,578 + +0.1
547,578 + -0.2
547,632 + +0.8
547,728 - Atu0562 0.15 +0.3
547,823 + Atu0562 0.33 -0.0
547,909 + Atu0562 0.49 +0.6
547,909 - Atu0562 0.49 +0.4
548,050 + Atu0562 0.75 -0.8
548,094 + Atu0562 0.83 +1.0
548,117 + Atu0562 0.87 +0.1
548,204 + +0.5
548,207 - +0.5
548,299 + +0.1
548,369 + Atu0563 0.15 +0.7
548,410 - Atu0563 0.19 +0.3
548,471 - Atu0563 0.25 +0.3
548,497 + Atu0563 0.27 +1.4
548,502 + Atu0563 0.28 +2.1
548,510 + Atu0563 0.28 +0.4
548,510 - Atu0563 0.28 +0.0
548,510 - Atu0563 0.28 +0.2
548,520 - Atu0563 0.29 +0.4
548,542 + Atu0563 0.32 -0.1
548,564 + Atu0563 0.34 +1.0
548,578 + Atu0563 0.35 +0.8

Or see this region's nucleotide sequence