Experiment: KB with Anethole 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4962 and Psyr_4963 are separated by 31 nucleotides Psyr_4963 and Psyr_4964 overlap by 4 nucleotides Psyr_4964 and Psyr_4965 are separated by 155 nucleotides Psyr_4965 and Psyr_4966 are separated by 92 nucleotides
Psyr_4962: Psyr_4962 - ImcF-related:Protein of unknown function DUF1215, at 5,882,205 to 5,886,137
_4962
Psyr_4963: Psyr_4963 - hypothetical protein, at 5,886,169 to 5,887,092
_4963
Psyr_4964: Psyr_4964 - OmpA/MotB, at 5,887,089 to 5,889,581
_4964
Psyr_4965: Psyr_4965 - Protein of unknown function DUF796, at 5,889,737 to 5,890,255
_4965
Psyr_4966: Psyr_4966 - ImpA, N-terminal, at 5,890,348 to 5,891,442
_4966
Position (kb) 5887
5888
5889
5890 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5886.750 kb on + strand, within Psyr_4963 at 5886.751 kb on - strand, within Psyr_4963 at 5886.751 kb on - strand, within Psyr_4963 at 5886.964 kb on + strand, within Psyr_4963 at 5886.964 kb on + strand, within Psyr_4963 at 5886.964 kb on + strand, within Psyr_4963 at 5886.965 kb on - strand, within Psyr_4963 at 5886.965 kb on - strand, within Psyr_4963 at 5886.965 kb on - strand, within Psyr_4963 at 5886.972 kb on - strand, within Psyr_4963 at 5887.043 kb on - strand at 5887.043 kb on - strand at 5887.104 kb on + strand at 5887.105 kb on - strand at 5887.105 kb on - strand at 5887.108 kb on - strand at 5887.128 kb on + strand at 5887.135 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.279 kb on + strand at 5887.279 kb on + strand at 5887.279 kb on + strand at 5887.279 kb on + strand at 5887.279 kb on + strand at 5887.279 kb on + strand at 5887.280 kb on - strand at 5887.280 kb on - strand at 5887.280 kb on - strand at 5887.638 kb on + strand, within Psyr_4964 at 5887.639 kb on - strand, within Psyr_4964 at 5887.851 kb on + strand, within Psyr_4964 at 5887.851 kb on + strand, within Psyr_4964 at 5887.852 kb on - strand, within Psyr_4964 at 5887.852 kb on - strand, within Psyr_4964 at 5888.019 kb on + strand, within Psyr_4964 at 5888.091 kb on + strand, within Psyr_4964 at 5888.092 kb on - strand, within Psyr_4964 at 5888.199 kb on + strand, within Psyr_4964 at 5888.199 kb on + strand, within Psyr_4964 at 5888.200 kb on - strand, within Psyr_4964 at 5888.350 kb on + strand, within Psyr_4964 at 5888.350 kb on + strand, within Psyr_4964 at 5888.351 kb on - strand, within Psyr_4964 at 5888.351 kb on - strand, within Psyr_4964 at 5888.351 kb on - strand, within Psyr_4964 at 5888.351 kb on - strand, within Psyr_4964 at 5888.382 kb on + strand, within Psyr_4964 at 5888.562 kb on + strand, within Psyr_4964 at 5888.563 kb on - strand, within Psyr_4964 at 5888.611 kb on - strand, within Psyr_4964 at 5888.613 kb on + strand, within Psyr_4964 at 5888.613 kb on + strand, within Psyr_4964 at 5888.613 kb on + strand, within Psyr_4964 at 5888.639 kb on - strand, within Psyr_4964 at 5888.673 kb on + strand, within Psyr_4964 at 5888.766 kb on + strand, within Psyr_4964 at 5888.791 kb on - strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.982 kb on + strand, within Psyr_4964 at 5889.057 kb on + strand, within Psyr_4964 at 5889.057 kb on + strand, within Psyr_4964 at 5889.063 kb on + strand, within Psyr_4964 at 5889.087 kb on + strand, within Psyr_4964 at 5889.088 kb on - strand, within Psyr_4964 at 5889.158 kb on + strand, within Psyr_4964 at 5889.158 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.163 kb on - strand, within Psyr_4964 at 5889.163 kb on - strand, within Psyr_4964 at 5889.163 kb on - strand, within Psyr_4964 at 5889.163 kb on - strand, within Psyr_4964 at 5889.163 kb on - strand, within Psyr_4964 at 5889.163 kb on - strand, within Psyr_4964 at 5889.421 kb on - strand at 5889.565 kb on + strand at 5889.565 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5890.028 kb on + strand, within Psyr_4965 at 5890.028 kb on + strand, within Psyr_4965 at 5890.028 kb on + strand, within Psyr_4965 at 5890.028 kb on + strand, within Psyr_4965 at 5890.170 kb on - strand, within Psyr_4965 at 5890.170 kb on - strand, within Psyr_4965 at 5890.170 kb on - strand, within Psyr_4965 at 5890.170 kb on - strand, within Psyr_4965 at 5890.245 kb on + strand at 5890.245 kb on + strand at 5890.246 kb on - strand at 5890.253 kb on + strand at 5890.254 kb on - strand at 5890.254 kb on - strand at 5890.327 kb on - strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.477 kb on + strand, within Psyr_4966 at 5890.478 kb on - strand, within Psyr_4966
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Anethole 10 mM remove 5,886,750 + Psyr_4963 0.63 -0.2 5,886,751 - Psyr_4963 0.63 -0.0 5,886,751 - Psyr_4963 0.63 +2.3 5,886,964 + Psyr_4963 0.86 -1.0 5,886,964 + Psyr_4963 0.86 -2.2 5,886,964 + Psyr_4963 0.86 -1.7 5,886,965 - Psyr_4963 0.86 +0.1 5,886,965 - Psyr_4963 0.86 -0.9 5,886,965 - Psyr_4963 0.86 -0.5 5,886,972 - Psyr_4963 0.87 +0.3 5,887,043 - -1.4 5,887,043 - +0.8 5,887,104 + -0.4 5,887,105 - -0.7 5,887,105 - +0.9 5,887,108 - +0.6 5,887,128 + -0.6 5,887,135 + +1.6 5,887,254 + +0.3 5,887,254 + -0.9 5,887,254 + -1.4 5,887,254 + -0.3 5,887,254 + -0.4 5,887,254 + -0.2 5,887,254 + +1.3 5,887,254 + +0.7 5,887,255 - +0.5 5,887,255 - -1.2 5,887,255 - +0.3 5,887,255 - -0.0 5,887,255 - +0.5 5,887,255 - +0.7 5,887,255 - -0.6 5,887,255 - +0.6 5,887,279 + +0.2 5,887,279 + +0.8 5,887,279 + -0.8 5,887,279 + +1.9 5,887,279 + -0.6 5,887,279 + -0.5 5,887,280 - +0.6 5,887,280 - +0.8 5,887,280 - +1.4 5,887,638 + Psyr_4964 0.22 -2.0 5,887,639 - Psyr_4964 0.22 +0.3 5,887,851 + Psyr_4964 0.31 -0.6 5,887,851 + Psyr_4964 0.31 +1.3 5,887,852 - Psyr_4964 0.31 +0.2 5,887,852 - Psyr_4964 0.31 -1.0 5,888,019 + Psyr_4964 0.37 +1.3 5,888,091 + Psyr_4964 0.40 -0.3 5,888,092 - Psyr_4964 0.40 +0.3 5,888,199 + Psyr_4964 0.45 -0.3 5,888,199 + Psyr_4964 0.45 -1.3 5,888,200 - Psyr_4964 0.45 -0.6 5,888,350 + Psyr_4964 0.51 -0.7 5,888,350 + Psyr_4964 0.51 -0.6 5,888,351 - Psyr_4964 0.51 +1.3 5,888,351 - Psyr_4964 0.51 +0.8 5,888,351 - Psyr_4964 0.51 +0.6 5,888,351 - Psyr_4964 0.51 -1.6 5,888,382 + Psyr_4964 0.52 -0.8 5,888,562 + Psyr_4964 0.59 +1.0 5,888,563 - Psyr_4964 0.59 +0.3 5,888,611 - Psyr_4964 0.61 +0.3 5,888,613 + Psyr_4964 0.61 -2.2 5,888,613 + Psyr_4964 0.61 -1.1 5,888,613 + Psyr_4964 0.61 +0.6 5,888,639 - Psyr_4964 0.62 +1.0 5,888,673 + Psyr_4964 0.64 -0.2 5,888,766 + Psyr_4964 0.67 +0.3 5,888,791 - Psyr_4964 0.68 -0.5 5,888,913 + Psyr_4964 0.73 +2.0 5,888,913 + Psyr_4964 0.73 -0.5 5,888,913 + Psyr_4964 0.73 +0.5 5,888,913 + Psyr_4964 0.73 -0.2 5,888,913 + Psyr_4964 0.73 +0.7 5,888,913 + Psyr_4964 0.73 -0.9 5,888,913 + Psyr_4964 0.73 +0.1 5,888,913 + Psyr_4964 0.73 -0.4 5,888,913 + Psyr_4964 0.73 -0.6 5,888,913 + Psyr_4964 0.73 +0.7 5,888,913 + Psyr_4964 0.73 -0.8 5,888,913 + Psyr_4964 0.73 +0.3 5,888,913 + Psyr_4964 0.73 +0.1 5,888,914 - Psyr_4964 0.73 -2.2 5,888,914 - Psyr_4964 0.73 -1.5 5,888,914 - Psyr_4964 0.73 -0.6 5,888,914 - Psyr_4964 0.73 +0.1 5,888,914 - Psyr_4964 0.73 -0.2 5,888,914 - Psyr_4964 0.73 -0.1 5,888,914 - Psyr_4964 0.73 -0.5 5,888,914 - Psyr_4964 0.73 +0.6 5,888,914 - Psyr_4964 0.73 +0.8 5,888,982 + Psyr_4964 0.76 +0.6 5,889,057 + Psyr_4964 0.79 +1.4 5,889,057 + Psyr_4964 0.79 -2.8 5,889,063 + Psyr_4964 0.79 -0.1 5,889,087 + Psyr_4964 0.80 -0.5 5,889,088 - Psyr_4964 0.80 +2.3 5,889,158 + Psyr_4964 0.83 -0.1 5,889,158 + Psyr_4964 0.83 -1.7 5,889,162 + Psyr_4964 0.83 -0.8 5,889,162 + Psyr_4964 0.83 -1.0 5,889,162 + Psyr_4964 0.83 -0.2 5,889,162 + Psyr_4964 0.83 -1.0 5,889,162 + Psyr_4964 0.83 -2.0 5,889,162 + Psyr_4964 0.83 -0.4 5,889,162 + Psyr_4964 0.83 -0.4 5,889,163 - Psyr_4964 0.83 -0.1 5,889,163 - Psyr_4964 0.83 +0.7 5,889,163 - Psyr_4964 0.83 -0.4 5,889,163 - Psyr_4964 0.83 +1.8 5,889,163 - Psyr_4964 0.83 +1.3 5,889,163 - Psyr_4964 0.83 -0.4 5,889,421 - +0.6 5,889,565 + +0.3 5,889,565 + +1.1 5,889,752 + -1.1 5,889,752 + -1.9 5,889,752 + -1.9 5,889,752 + -1.0 5,889,752 + +0.8 5,889,752 + -0.5 5,889,752 + -0.6 5,889,752 + -0.0 5,889,752 + -0.5 5,889,752 + +4.1 5,889,752 + -0.9 5,889,753 - +0.3 5,889,753 - -1.0 5,889,753 - -0.6 5,889,753 - -0.2 5,889,753 - +1.5 5,889,753 - +0.2 5,889,753 - +0.3 5,889,753 - -0.0 5,889,753 - +0.3 5,889,753 - -0.3 5,889,753 - -1.8 5,889,753 - -0.9 5,890,028 + Psyr_4965 0.56 -0.9 5,890,028 + Psyr_4965 0.56 -0.5 5,890,028 + Psyr_4965 0.56 +0.1 5,890,028 + Psyr_4965 0.56 -0.5 5,890,170 - Psyr_4965 0.83 +0.0 5,890,170 - Psyr_4965 0.83 -1.0 5,890,170 - Psyr_4965 0.83 -0.1 5,890,170 - Psyr_4965 0.83 -0.5 5,890,245 + -0.1 5,890,245 + +2.1 5,890,246 - +0.2 5,890,253 + -0.6 5,890,254 - -0.8 5,890,254 - +0.0 5,890,327 - +0.2 5,890,347 + +0.7 5,890,347 + -0.6 5,890,347 + -0.4 5,890,347 + +1.8 5,890,347 + +0.6 5,890,348 - +0.5 5,890,348 - -0.6 5,890,348 - +0.0 5,890,348 - -0.1 5,890,348 - +1.3 5,890,348 - -0.4 5,890,348 - +0.0 5,890,477 + Psyr_4966 0.12 -1.3 5,890,478 - Psyr_4966 0.12 +0.4
Or see this region's nucleotide sequence