Experiment: KB with Anethole 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3664 and Psyr_3665 are separated by 226 nucleotides Psyr_3665 and Psyr_3666 are separated by 408 nucleotides Psyr_3666 and Psyr_3667 are separated by 641 nucleotides
Psyr_3664: Psyr_3664 - DTW, at 4,350,591 to 4,351,190
_3664
Psyr_3665: Psyr_3665 - conserved hypothetical protein, at 4,351,417 to 4,351,719
_3665
Psyr_3666: Psyr_3666 - Protein of unknown function DUF195, at 4,352,128 to 4,353,606
_3666
Psyr_3667: Psyr_3667 - conserved hypothetical protein, at 4,354,248 to 4,354,553
_3667
Position (kb) 4352
4353
4354 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4351.199 kb on - strand at 4351.376 kb on + strand at 4351.377 kb on - strand at 4351.377 kb on - strand at 4351.377 kb on - strand at 4351.377 kb on - strand at 4351.377 kb on - strand at 4351.377 kb on - strand at 4351.387 kb on + strand at 4351.387 kb on + strand at 4351.458 kb on - strand, within Psyr_3665 at 4351.458 kb on - strand, within Psyr_3665 at 4351.469 kb on + strand, within Psyr_3665 at 4351.470 kb on - strand, within Psyr_3665 at 4351.470 kb on - strand, within Psyr_3665 at 4351.470 kb on - strand, within Psyr_3665 at 4351.777 kb on + strand at 4351.873 kb on - strand at 4351.893 kb on + strand at 4351.893 kb on + strand at 4351.893 kb on + strand at 4351.893 kb on + strand at 4351.893 kb on + strand at 4351.894 kb on - strand at 4351.894 kb on - strand at 4351.923 kb on - strand at 4351.928 kb on + strand at 4351.928 kb on + strand at 4351.928 kb on + strand at 4351.948 kb on + strand at 4351.948 kb on + strand at 4351.949 kb on - strand at 4351.966 kb on + strand at 4351.989 kb on + strand at 4351.989 kb on + strand at 4351.989 kb on + strand at 4351.989 kb on + strand at 4351.989 kb on + strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4352.066 kb on + strand at 4352.066 kb on + strand at 4352.067 kb on - strand at 4352.074 kb on - strand at 4352.272 kb on - strand at 4352.361 kb on - strand, within Psyr_3666 at 4352.601 kb on - strand, within Psyr_3666 at 4352.601 kb on - strand, within Psyr_3666 at 4352.601 kb on - strand, within Psyr_3666 at 4352.644 kb on + strand, within Psyr_3666 at 4352.644 kb on + strand, within Psyr_3666 at 4352.645 kb on - strand, within Psyr_3666 at 4352.645 kb on - strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.706 kb on - strand, within Psyr_3666 at 4352.823 kb on - strand, within Psyr_3666 at 4353.606 kb on + strand at 4353.629 kb on - strand at 4353.716 kb on + strand at 4353.717 kb on - strand at 4353.766 kb on - strand at 4353.925 kb on - strand at 4354.039 kb on + strand at 4354.040 kb on - strand at 4354.040 kb on - strand at 4354.040 kb on - strand at 4354.076 kb on + strand at 4354.077 kb on - strand at 4354.140 kb on - strand at 4354.218 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Anethole 10 mM remove 4,351,199 - -0.0 4,351,376 + +0.5 4,351,377 - +0.3 4,351,377 - -0.3 4,351,377 - +1.5 4,351,377 - -0.7 4,351,377 - -1.5 4,351,377 - +0.4 4,351,387 + +0.7 4,351,387 + -1.0 4,351,458 - Psyr_3665 0.14 +0.4 4,351,458 - Psyr_3665 0.14 +0.4 4,351,469 + Psyr_3665 0.17 -0.5 4,351,470 - Psyr_3665 0.17 -0.7 4,351,470 - Psyr_3665 0.17 -1.2 4,351,470 - Psyr_3665 0.17 -0.7 4,351,777 + +0.5 4,351,873 - +0.8 4,351,893 + -0.2 4,351,893 + -0.2 4,351,893 + -0.5 4,351,893 + +0.4 4,351,893 + +1.7 4,351,894 - -0.3 4,351,894 - -0.6 4,351,923 - +1.0 4,351,928 + -0.7 4,351,928 + -0.1 4,351,928 + -0.1 4,351,948 + -0.5 4,351,948 + +0.7 4,351,949 - +1.0 4,351,966 + -1.0 4,351,989 + +0.4 4,351,989 + -0.3 4,351,989 + -0.0 4,351,989 + +1.2 4,351,989 + -0.8 4,351,990 - -0.9 4,351,990 - +0.9 4,351,990 - +0.7 4,352,066 + +0.3 4,352,066 + -0.3 4,352,067 - -1.3 4,352,074 - -1.1 4,352,272 - +0.4 4,352,361 - Psyr_3666 0.16 +0.5 4,352,601 - Psyr_3666 0.32 -0.6 4,352,601 - Psyr_3666 0.32 +0.5 4,352,601 - Psyr_3666 0.32 -0.2 4,352,644 + Psyr_3666 0.35 +2.8 4,352,644 + Psyr_3666 0.35 +1.4 4,352,645 - Psyr_3666 0.35 -1.6 4,352,645 - Psyr_3666 0.35 +1.2 4,352,696 + Psyr_3666 0.38 +1.0 4,352,696 + Psyr_3666 0.38 -1.3 4,352,696 + Psyr_3666 0.38 -0.5 4,352,696 + Psyr_3666 0.38 -0.3 4,352,696 + Psyr_3666 0.38 -0.1 4,352,696 + Psyr_3666 0.38 +0.7 4,352,696 + Psyr_3666 0.38 -0.1 4,352,697 - Psyr_3666 0.38 +1.6 4,352,697 - Psyr_3666 0.38 +0.3 4,352,697 - Psyr_3666 0.38 -0.4 4,352,697 - Psyr_3666 0.38 +0.4 4,352,697 - Psyr_3666 0.38 -1.4 4,352,697 - Psyr_3666 0.38 +0.4 4,352,697 - Psyr_3666 0.38 -0.4 4,352,697 - Psyr_3666 0.38 -0.3 4,352,697 - Psyr_3666 0.38 -0.8 4,352,697 - Psyr_3666 0.38 +0.1 4,352,697 - Psyr_3666 0.38 -0.0 4,352,697 - Psyr_3666 0.38 +1.4 4,352,697 - Psyr_3666 0.38 +1.7 4,352,697 - Psyr_3666 0.38 +2.0 4,352,697 - Psyr_3666 0.38 +0.3 4,352,706 - Psyr_3666 0.39 +1.0 4,352,823 - Psyr_3666 0.47 -0.1 4,353,606 + -2.5 4,353,629 - -0.6 4,353,716 + -0.1 4,353,717 - +0.8 4,353,766 - +1.2 4,353,925 - +0.1 4,354,039 + +0.3 4,354,040 - +0.5 4,354,040 - -0.0 4,354,040 - -2.1 4,354,076 + -0.6 4,354,077 - -0.0 4,354,140 - +1.5 4,354,218 + -0.5
Or see this region's nucleotide sequence