Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3265

Experiment: KB with Anethole 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3264 and Psyr_3265 are separated by 69 nucleotidesPsyr_3265 and Psyr_3266 are separated by 466 nucleotides Psyr_3264: Psyr_3264 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 3,908,422 to 3,909,999 _3264 Psyr_3265: Psyr_3265 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 3,910,069 to 3,911,004 _3265 Psyr_3266: Psyr_3266 - Oxidoreductase, N-terminal:Oxidoreductase, C-terminal, at 3,911,471 to 3,912,490 _3266 Position (kb) 3910 3911 3912Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3909.260 kb on + strand, within Psyr_3264at 3909.260 kb on + strand, within Psyr_3264at 3909.261 kb on - strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.329 kb on + strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.330 kb on - strand, within Psyr_3264at 3909.443 kb on + strand, within Psyr_3264at 3909.443 kb on + strand, within Psyr_3264at 3909.443 kb on + strand, within Psyr_3264at 3909.443 kb on + strand, within Psyr_3264at 3909.444 kb on - strand, within Psyr_3264at 3909.444 kb on - strand, within Psyr_3264at 3909.444 kb on - strand, within Psyr_3264at 3909.444 kb on - strand, within Psyr_3264at 3909.444 kb on - strand, within Psyr_3264at 3909.756 kb on - strand, within Psyr_3264at 3910.005 kb on + strandat 3910.005 kb on + strandat 3910.006 kb on - strandat 3910.006 kb on - strandat 3910.006 kb on - strandat 3910.071 kb on - strandat 3910.071 kb on - strandat 3910.421 kb on + strand, within Psyr_3265at 3910.421 kb on + strand, within Psyr_3265at 3910.422 kb on - strand, within Psyr_3265at 3910.422 kb on - strand, within Psyr_3265at 3910.422 kb on - strand, within Psyr_3265at 3910.422 kb on - strand, within Psyr_3265at 3910.422 kb on - strand, within Psyr_3265at 3910.444 kb on + strand, within Psyr_3265at 3910.445 kb on - strand, within Psyr_3265at 3910.571 kb on + strand, within Psyr_3265at 3910.572 kb on - strand, within Psyr_3265at 3910.572 kb on - strand, within Psyr_3265at 3910.870 kb on - strand, within Psyr_3265at 3910.870 kb on - strand, within Psyr_3265at 3910.884 kb on - strand, within Psyr_3265at 3910.884 kb on - strand, within Psyr_3265at 3910.884 kb on - strand, within Psyr_3265at 3911.034 kb on + strandat 3911.034 kb on + strandat 3911.035 kb on - strandat 3911.035 kb on - strandat 3911.226 kb on + strandat 3911.227 kb on - strandat 3911.230 kb on + strandat 3911.473 kb on - strandat 3911.769 kb on + strand, within Psyr_3266at 3911.769 kb on + strand, within Psyr_3266at 3911.925 kb on + strand, within Psyr_3266at 3911.926 kb on - strand, within Psyr_3266at 3911.926 kb on - strand, within Psyr_3266at 3911.926 kb on - strand, within Psyr_3266at 3911.926 kb on - strand, within Psyr_3266at 3911.952 kb on - strand, within Psyr_3266

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Anethole 10 mM
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3,909,260 + Psyr_3264 0.53 -0.4
3,909,260 + Psyr_3264 0.53 +0.4
3,909,261 - Psyr_3264 0.53 -2.7
3,909,329 + Psyr_3264 0.57 +1.2
3,909,329 + Psyr_3264 0.57 +0.4
3,909,329 + Psyr_3264 0.57 -0.2
3,909,329 + Psyr_3264 0.57 -0.5
3,909,330 - Psyr_3264 0.58 -0.6
3,909,330 - Psyr_3264 0.58 +1.6
3,909,330 - Psyr_3264 0.58 +3.0
3,909,330 - Psyr_3264 0.58 -2.0
3,909,330 - Psyr_3264 0.58 +1.0
3,909,330 - Psyr_3264 0.58 -1.8
3,909,330 - Psyr_3264 0.58 -0.0
3,909,330 - Psyr_3264 0.58 +1.0
3,909,330 - Psyr_3264 0.58 -2.2
3,909,330 - Psyr_3264 0.58 -0.3
3,909,330 - Psyr_3264 0.58 -1.2
3,909,443 + Psyr_3264 0.65 -0.0
3,909,443 + Psyr_3264 0.65 -0.0
3,909,443 + Psyr_3264 0.65 -2.0
3,909,443 + Psyr_3264 0.65 +0.2
3,909,444 - Psyr_3264 0.65 -0.4
3,909,444 - Psyr_3264 0.65 -0.4
3,909,444 - Psyr_3264 0.65 -0.2
3,909,444 - Psyr_3264 0.65 -2.2
3,909,444 - Psyr_3264 0.65 +1.2
3,909,756 - Psyr_3264 0.85 -0.8
3,910,005 + +0.2
3,910,005 + +1.9
3,910,006 - -0.8
3,910,006 - +0.6
3,910,006 - +1.9
3,910,071 - -3.2
3,910,071 - +1.0
3,910,421 + Psyr_3265 0.38 +1.6
3,910,421 + Psyr_3265 0.38 -0.6
3,910,422 - Psyr_3265 0.38 +0.3
3,910,422 - Psyr_3265 0.38 +1.0
3,910,422 - Psyr_3265 0.38 +0.3
3,910,422 - Psyr_3265 0.38 +1.2
3,910,422 - Psyr_3265 0.38 +2.2
3,910,444 + Psyr_3265 0.40 +3.3
3,910,445 - Psyr_3265 0.40 +0.7
3,910,571 + Psyr_3265 0.54 +0.9
3,910,572 - Psyr_3265 0.54 +0.3
3,910,572 - Psyr_3265 0.54 -0.0
3,910,870 - Psyr_3265 0.86 +3.0
3,910,870 - Psyr_3265 0.86 +0.2
3,910,884 - Psyr_3265 0.87 -0.0
3,910,884 - Psyr_3265 0.87 +0.4
3,910,884 - Psyr_3265 0.87 -1.9
3,911,034 + +0.8
3,911,034 + +0.3
3,911,035 - -0.4
3,911,035 - -0.0
3,911,226 + -0.8
3,911,227 - -1.0
3,911,230 + -0.6
3,911,473 - +1.2
3,911,769 + Psyr_3266 0.29 +0.1
3,911,769 + Psyr_3266 0.29 -1.5
3,911,925 + Psyr_3266 0.45 +1.5
3,911,926 - Psyr_3266 0.45 -0.6
3,911,926 - Psyr_3266 0.45 +1.5
3,911,926 - Psyr_3266 0.45 -0.3
3,911,926 - Psyr_3266 0.45 +0.6
3,911,952 - Psyr_3266 0.47 -1.0

Or see this region's nucleotide sequence