Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3238

Experiment: KB with Anethole 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3236 and Psyr_3237 are separated by 129 nucleotidesPsyr_3237 and Psyr_3238 are separated by 42 nucleotidesPsyr_3238 and Psyr_3239 are separated by 234 nucleotides Psyr_3236: Psyr_3236 - transcriptional regulator, LysR family, at 3,874,607 to 3,875,497 _3236 Psyr_3237: Psyr_3237 - 3-oxoacid CoA-transferase, at 3,875,627 to 3,876,328 _3237 Psyr_3238: Psyr_3238 - 3-oxoacid CoA-transferase, at 3,876,371 to 3,877,027 _3238 Psyr_3239: Psyr_3239 - Short chain fatty acid transporter, at 3,877,262 to 3,878,680 _3239 Position (kb) 3876 3877 3878Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3875.609 kb on + strandat 3875.609 kb on + strandat 3875.610 kb on - strandat 3875.611 kb on + strandat 3875.611 kb on + strandat 3875.611 kb on + strandat 3875.611 kb on + strandat 3875.611 kb on + strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.657 kb on + strandat 3875.698 kb on - strand, within Psyr_3237at 3875.987 kb on + strand, within Psyr_3237at 3875.987 kb on + strand, within Psyr_3237at 3875.988 kb on - strand, within Psyr_3237at 3875.988 kb on - strand, within Psyr_3237at 3876.135 kb on - strand, within Psyr_3237at 3876.135 kb on - strand, within Psyr_3237at 3876.260 kb on + strandat 3876.260 kb on + strandat 3876.261 kb on - strandat 3876.276 kb on + strandat 3876.277 kb on - strandat 3876.277 kb on - strandat 3876.354 kb on + strandat 3876.354 kb on + strandat 3876.355 kb on - strandat 3876.428 kb on + strandat 3876.431 kb on + strandat 3876.431 kb on + strandat 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.477 kb on + strand, within Psyr_3238at 3876.478 kb on - strand, within Psyr_3238at 3876.478 kb on - strand, within Psyr_3238at 3876.672 kb on + strand, within Psyr_3238at 3877.208 kb on + strandat 3877.209 kb on - strandat 3877.238 kb on + strandat 3877.238 kb on + strandat 3877.238 kb on + strandat 3877.238 kb on + strandat 3877.238 kb on + strandat 3877.243 kb on - strandat 3877.275 kb on + strandat 3877.275 kb on + strandat 3877.276 kb on - strandat 3877.276 kb on - strandat 3877.276 kb on - strandat 3877.276 kb on - strandat 3877.497 kb on - strand, within Psyr_3239at 3877.715 kb on + strand, within Psyr_3239at 3878.019 kb on - strand, within Psyr_3239

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Anethole 10 mM
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3,875,609 + +0.6
3,875,609 + -2.4
3,875,610 - -0.7
3,875,611 + -0.1
3,875,611 + +0.6
3,875,611 + +2.1
3,875,611 + -0.9
3,875,611 + -2.5
3,875,612 - -0.9
3,875,612 - -0.1
3,875,612 - -1.5
3,875,657 + -1.8
3,875,698 - Psyr_3237 0.10 -0.9
3,875,987 + Psyr_3237 0.51 -1.8
3,875,987 + Psyr_3237 0.51 +0.3
3,875,988 - Psyr_3237 0.51 +1.0
3,875,988 - Psyr_3237 0.51 -0.4
3,876,135 - Psyr_3237 0.72 -1.4
3,876,135 - Psyr_3237 0.72 -1.0
3,876,260 + +0.5
3,876,260 + -1.5
3,876,261 - +1.6
3,876,276 + +0.1
3,876,277 - -0.6
3,876,277 - +0.6
3,876,354 + +0.1
3,876,354 + -0.7
3,876,355 - +1.3
3,876,428 + +0.5
3,876,431 + -0.7
3,876,431 + +3.0
3,876,473 + Psyr_3238 0.16 -0.7
3,876,473 + Psyr_3238 0.16 -1.8
3,876,473 + Psyr_3238 0.16 +3.6
3,876,473 + Psyr_3238 0.16 +0.9
3,876,473 + Psyr_3238 0.16 +3.3
3,876,473 + Psyr_3238 0.16 -1.2
3,876,473 + Psyr_3238 0.16 +3.3
3,876,473 + Psyr_3238 0.16 -1.6
3,876,473 + Psyr_3238 0.16 -0.2
3,876,473 + Psyr_3238 0.16 +0.5
3,876,473 + Psyr_3238 0.16 +1.2
3,876,473 + Psyr_3238 0.16 +0.5
3,876,473 + Psyr_3238 0.16 +1.0
3,876,473 + Psyr_3238 0.16 -0.1
3,876,473 + Psyr_3238 0.16 -0.7
3,876,473 + Psyr_3238 0.16 +0.7
3,876,473 + Psyr_3238 0.16 +0.3
3,876,474 - Psyr_3238 0.16 +0.7
3,876,474 - Psyr_3238 0.16 +1.0
3,876,474 - Psyr_3238 0.16 -0.6
3,876,474 - Psyr_3238 0.16 -2.0
3,876,474 - Psyr_3238 0.16 -1.5
3,876,474 - Psyr_3238 0.16 -2.3
3,876,474 - Psyr_3238 0.16 -1.0
3,876,474 - Psyr_3238 0.16 +0.4
3,876,474 - Psyr_3238 0.16 +0.1
3,876,474 - Psyr_3238 0.16 +0.6
3,876,474 - Psyr_3238 0.16 +0.2
3,876,474 - Psyr_3238 0.16 -0.5
3,876,474 - Psyr_3238 0.16 +3.6
3,876,474 - Psyr_3238 0.16 -0.7
3,876,474 - Psyr_3238 0.16 -0.5
3,876,474 - Psyr_3238 0.16 +0.5
3,876,477 + Psyr_3238 0.16 -0.4
3,876,478 - Psyr_3238 0.16 +0.6
3,876,478 - Psyr_3238 0.16 +3.3
3,876,672 + Psyr_3238 0.46 +0.6
3,877,208 + -0.8
3,877,209 - -0.0
3,877,238 + -0.6
3,877,238 + +0.7
3,877,238 + +1.3
3,877,238 + +0.1
3,877,238 + -0.0
3,877,243 - +0.1
3,877,275 + -0.7
3,877,275 + +2.0
3,877,276 - +1.5
3,877,276 - -0.2
3,877,276 - -0.4
3,877,276 - -0.9
3,877,497 - Psyr_3239 0.17 -0.6
3,877,715 + Psyr_3239 0.32 -0.6
3,878,019 - Psyr_3239 0.53 +0.4

Or see this region's nucleotide sequence