Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2994

Experiment: KB with Anethole 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2993 and Psyr_2994 overlap by 11 nucleotidesPsyr_2994 and Psyr_2995 overlap by 4 nucleotides Psyr_2993: Psyr_2993 - maltooligosyl trehalose hydrolase, at 3,585,283 to 3,587,097 _2993 Psyr_2994: Psyr_2994 - Glycoside hydrolase, family 77, at 3,587,087 to 3,589,165 _2994 Psyr_2995: Psyr_2995 - maltooligosyl trehalose synthase, at 3,589,162 to 3,591,945 _2995 Position (kb) 3587 3588 3589 3590Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 3586.264 kb on + strand, within Psyr_2993at 3586.264 kb on + strand, within Psyr_2993at 3586.265 kb on - strand, within Psyr_2993at 3586.265 kb on - strand, within Psyr_2993at 3586.330 kb on + strand, within Psyr_2993at 3586.360 kb on - strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.755 kb on - strand, within Psyr_2993at 3586.755 kb on - strand, within Psyr_2993at 3586.755 kb on - strand, within Psyr_2993at 3586.755 kb on - strand, within Psyr_2993at 3586.755 kb on - strand, within Psyr_2993at 3586.786 kb on + strand, within Psyr_2993at 3586.786 kb on + strand, within Psyr_2993at 3586.787 kb on - strand, within Psyr_2993at 3586.787 kb on - strand, within Psyr_2993at 3586.861 kb on - strand, within Psyr_2993at 3586.982 kb on + strandat 3586.983 kb on - strandat 3587.039 kb on - strandat 3587.039 kb on - strandat 3587.365 kb on - strand, within Psyr_2994at 3587.365 kb on - strand, within Psyr_2994at 3587.564 kb on + strand, within Psyr_2994at 3587.715 kb on - strand, within Psyr_2994at 3587.904 kb on - strand, within Psyr_2994at 3588.510 kb on - strand, within Psyr_2994at 3588.854 kb on + strand, within Psyr_2994at 3588.855 kb on - strand, within Psyr_2994at 3588.958 kb on + strandat 3588.959 kb on - strandat 3588.959 kb on - strandat 3588.959 kb on - strandat 3589.122 kb on + strandat 3589.122 kb on + strandat 3589.123 kb on - strandat 3589.175 kb on + strandat 3589.175 kb on + strandat 3589.176 kb on - strandat 3589.176 kb on - strandat 3589.253 kb on - strandat 3589.253 kb on - strandat 3589.253 kb on - strandat 3589.283 kb on - strandat 3589.344 kb on + strandat 3589.516 kb on + strand, within Psyr_2995at 3589.517 kb on - strand, within Psyr_2995at 3589.562 kb on + strand, within Psyr_2995at 3589.601 kb on - strand, within Psyr_2995at 3589.663 kb on + strand, within Psyr_2995at 3589.664 kb on - strand, within Psyr_2995at 3589.664 kb on - strand, within Psyr_2995at 3589.664 kb on - strand, within Psyr_2995at 3589.676 kb on - strand, within Psyr_2995at 3589.708 kb on + strand, within Psyr_2995at 3589.708 kb on + strand, within Psyr_2995at 3589.795 kb on + strand, within Psyr_2995at 3589.795 kb on + strand, within Psyr_2995at 3589.796 kb on - strand, within Psyr_2995

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Anethole 10 mM
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3,586,264 + Psyr_2993 0.54 -0.3
3,586,264 + Psyr_2993 0.54 +3.4
3,586,265 - Psyr_2993 0.54 +0.3
3,586,265 - Psyr_2993 0.54 -0.9
3,586,330 + Psyr_2993 0.58 -0.6
3,586,360 - Psyr_2993 0.59 +0.2
3,586,754 + Psyr_2993 0.81 +0.1
3,586,754 + Psyr_2993 0.81 +3.1
3,586,754 + Psyr_2993 0.81 +1.1
3,586,754 + Psyr_2993 0.81 -0.9
3,586,754 + Psyr_2993 0.81 -0.3
3,586,754 + Psyr_2993 0.81 -0.4
3,586,754 + Psyr_2993 0.81 -0.8
3,586,754 + Psyr_2993 0.81 -0.3
3,586,754 + Psyr_2993 0.81 -0.4
3,586,754 + Psyr_2993 0.81 +1.1
3,586,755 - Psyr_2993 0.81 +0.1
3,586,755 - Psyr_2993 0.81 -1.3
3,586,755 - Psyr_2993 0.81 +0.9
3,586,755 - Psyr_2993 0.81 +0.5
3,586,755 - Psyr_2993 0.81 +0.4
3,586,786 + Psyr_2993 0.83 +0.0
3,586,786 + Psyr_2993 0.83 +0.6
3,586,787 - Psyr_2993 0.83 +0.3
3,586,787 - Psyr_2993 0.83 -0.7
3,586,861 - Psyr_2993 0.87 -0.9
3,586,982 + +0.6
3,586,983 - -0.4
3,587,039 - -0.9
3,587,039 - +0.2
3,587,365 - Psyr_2994 0.13 -0.9
3,587,365 - Psyr_2994 0.13 -1.5
3,587,564 + Psyr_2994 0.23 +0.6
3,587,715 - Psyr_2994 0.30 +1.6
3,587,904 - Psyr_2994 0.39 +1.7
3,588,510 - Psyr_2994 0.68 -0.5
3,588,854 + Psyr_2994 0.85 +1.1
3,588,855 - Psyr_2994 0.85 +0.9
3,588,958 + -0.4
3,588,959 - +1.6
3,588,959 - -0.4
3,588,959 - +0.3
3,589,122 + -0.6
3,589,122 + +0.7
3,589,123 - -0.2
3,589,175 + -0.5
3,589,175 + +2.1
3,589,176 - -0.8
3,589,176 - -0.4
3,589,253 - +0.7
3,589,253 - +0.2
3,589,253 - -1.0
3,589,283 - -1.0
3,589,344 + +3.0
3,589,516 + Psyr_2995 0.13 -0.1
3,589,517 - Psyr_2995 0.13 -0.3
3,589,562 + Psyr_2995 0.14 +0.9
3,589,601 - Psyr_2995 0.16 +2.0
3,589,663 + Psyr_2995 0.18 +0.5
3,589,664 - Psyr_2995 0.18 +1.0
3,589,664 - Psyr_2995 0.18 +2.0
3,589,664 - Psyr_2995 0.18 +5.0
3,589,676 - Psyr_2995 0.18 +0.0
3,589,708 + Psyr_2995 0.20 -1.2
3,589,708 + Psyr_2995 0.20 -0.3
3,589,795 + Psyr_2995 0.23 -1.3
3,589,795 + Psyr_2995 0.23 +0.6
3,589,796 - Psyr_2995 0.23 -0.3

Or see this region's nucleotide sequence