Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2621

Experiment: KB with Anethole 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2620 and Psyr_2621 overlap by 4 nucleotidesPsyr_2621 and Psyr_2622 overlap by 4 nucleotides Psyr_2620: Psyr_2620 - RND efflux system, outer membrane lipoprotein, NodT, at 3,177,351 to 3,178,781 _2620 Psyr_2621: Psyr_2621 - Secretion protein HlyD, at 3,178,778 to 3,179,881 _2621 Psyr_2622: Psyr_2622 - Acriflavin resistance protein, at 3,179,878 to 3,182,922 _2622 Position (kb) 3178 3179 3180Strain fitness (log2 ratio) -1 0 1 2 3 4at 3177.848 kb on - strand, within Psyr_2620at 3177.916 kb on - strand, within Psyr_2620at 3178.183 kb on + strand, within Psyr_2620at 3178.334 kb on - strand, within Psyr_2620at 3178.532 kb on + strand, within Psyr_2620at 3178.555 kb on - strand, within Psyr_2620at 3178.705 kb on - strandat 3178.788 kb on + strandat 3178.788 kb on + strandat 3179.182 kb on - strand, within Psyr_2621at 3179.335 kb on + strand, within Psyr_2621at 3179.336 kb on - strand, within Psyr_2621at 3179.568 kb on - strand, within Psyr_2621at 3179.568 kb on - strand, within Psyr_2621at 3179.568 kb on - strand, within Psyr_2621at 3179.610 kb on - strand, within Psyr_2621at 3179.693 kb on + strand, within Psyr_2621at 3179.693 kb on + strand, within Psyr_2621at 3179.694 kb on - strand, within Psyr_2621at 3179.694 kb on - strand, within Psyr_2621at 3179.694 kb on - strand, within Psyr_2621at 3179.694 kb on - strand, within Psyr_2621at 3180.201 kb on - strand, within Psyr_2622at 3180.201 kb on - strand, within Psyr_2622at 3180.298 kb on + strand, within Psyr_2622at 3180.298 kb on + strand, within Psyr_2622at 3180.298 kb on + strand, within Psyr_2622at 3180.299 kb on - strand, within Psyr_2622at 3180.299 kb on - strand, within Psyr_2622at 3180.380 kb on + strand, within Psyr_2622at 3180.800 kb on + strand, within Psyr_2622at 3180.834 kb on + strand, within Psyr_2622at 3180.862 kb on + strand, within Psyr_2622at 3180.862 kb on + strand, within Psyr_2622at 3180.862 kb on + strand, within Psyr_2622at 3180.863 kb on - strand, within Psyr_2622

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Anethole 10 mM
remove
3,177,848 - Psyr_2620 0.35 -1.3
3,177,916 - Psyr_2620 0.39 -0.7
3,178,183 + Psyr_2620 0.58 +0.3
3,178,334 - Psyr_2620 0.69 +0.3
3,178,532 + Psyr_2620 0.83 -0.3
3,178,555 - Psyr_2620 0.84 -1.5
3,178,705 - +1.9
3,178,788 + +1.4
3,178,788 + +0.5
3,179,182 - Psyr_2621 0.37 +1.6
3,179,335 + Psyr_2621 0.50 +4.1
3,179,336 - Psyr_2621 0.51 -0.1
3,179,568 - Psyr_2621 0.72 +1.5
3,179,568 - Psyr_2621 0.72 +1.1
3,179,568 - Psyr_2621 0.72 +0.1
3,179,610 - Psyr_2621 0.75 +0.9
3,179,693 + Psyr_2621 0.83 +0.7
3,179,693 + Psyr_2621 0.83 +1.7
3,179,694 - Psyr_2621 0.83 -0.2
3,179,694 - Psyr_2621 0.83 -1.2
3,179,694 - Psyr_2621 0.83 +1.8
3,179,694 - Psyr_2621 0.83 -0.5
3,180,201 - Psyr_2622 0.11 -0.7
3,180,201 - Psyr_2622 0.11 -0.5
3,180,298 + Psyr_2622 0.14 -0.7
3,180,298 + Psyr_2622 0.14 +1.5
3,180,298 + Psyr_2622 0.14 +0.8
3,180,299 - Psyr_2622 0.14 +2.1
3,180,299 - Psyr_2622 0.14 +0.1
3,180,380 + Psyr_2622 0.16 -0.0
3,180,800 + Psyr_2622 0.30 +1.1
3,180,834 + Psyr_2622 0.31 -0.4
3,180,862 + Psyr_2622 0.32 +0.5
3,180,862 + Psyr_2622 0.32 -0.9
3,180,862 + Psyr_2622 0.32 -1.4
3,180,863 - Psyr_2622 0.32 +1.2

Or see this region's nucleotide sequence