Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1626

Experiment: KB with Anethole 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1625 and Psyr_1626 are separated by 97 nucleotidesPsyr_1626 and Psyr_1627 are separated by 190 nucleotidesPsyr_1627 and Psyr_1628 are separated by 76 nucleotides Psyr_1625: Psyr_1625 - 2-oxo-acid dehydrogenase E1 component homodimeric type, at 1,826,147 to 1,828,816 _1625 Psyr_1626: Psyr_1626 - Pirin, N-terminal:Pirin, C-terminal, at 1,828,914 to 1,829,768 _1626 Psyr_1627: Psyr_1627 - conserved hypothetical protein, at 1,829,959 to 1,830,369 _1627 Psyr_1628: Psyr_1628 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, N-terminal, at 1,830,446 to 1,832,893 _1628 Position (kb) 1828 1829 1830Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1827.932 kb on + strand, within Psyr_1625at 1827.932 kb on + strand, within Psyr_1625at 1827.932 kb on + strand, within Psyr_1625at 1827.932 kb on + strand, within Psyr_1625at 1827.933 kb on - strand, within Psyr_1625at 1827.933 kb on - strand, within Psyr_1625at 1827.933 kb on - strand, within Psyr_1625at 1827.933 kb on - strand, within Psyr_1625at 1827.933 kb on - strand, within Psyr_1625at 1827.933 kb on - strand, within Psyr_1625at 1827.934 kb on + strand, within Psyr_1625at 1827.934 kb on + strand, within Psyr_1625at 1827.934 kb on + strand, within Psyr_1625at 1827.935 kb on - strand, within Psyr_1625at 1827.935 kb on - strand, within Psyr_1625at 1827.942 kb on - strand, within Psyr_1625at 1828.174 kb on + strand, within Psyr_1625at 1828.174 kb on + strand, within Psyr_1625at 1828.174 kb on + strand, within Psyr_1625at 1828.175 kb on - strand, within Psyr_1625at 1828.175 kb on - strand, within Psyr_1625at 1828.175 kb on - strand, within Psyr_1625at 1828.175 kb on - strand, within Psyr_1625at 1828.195 kb on + strand, within Psyr_1625at 1828.195 kb on + strand, within Psyr_1625at 1828.195 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.202 kb on + strand, within Psyr_1625at 1828.202 kb on + strand, within Psyr_1625at 1828.203 kb on - strand, within Psyr_1625at 1828.203 kb on - strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.284 kb on - strand, within Psyr_1625at 1828.284 kb on - strand, within Psyr_1625at 1828.284 kb on - strand, within Psyr_1625at 1828.508 kb on + strand, within Psyr_1625at 1828.508 kb on + strand, within Psyr_1625at 1828.508 kb on + strand, within Psyr_1625at 1828.509 kb on - strand, within Psyr_1625at 1828.562 kb on + strandat 1828.562 kb on + strandat 1828.563 kb on - strandat 1828.599 kb on + strandat 1828.599 kb on + strandat 1828.767 kb on + strandat 1828.775 kb on + strandat 1828.994 kb on - strandat 1828.994 kb on - strandat 1829.149 kb on + strand, within Psyr_1626at 1829.149 kb on + strand, within Psyr_1626at 1829.150 kb on - strand, within Psyr_1626at 1829.150 kb on - strand, within Psyr_1626at 1829.150 kb on - strand, within Psyr_1626at 1829.150 kb on - strand, within Psyr_1626at 1829.150 kb on - strand, within Psyr_1626at 1829.155 kb on + strand, within Psyr_1626at 1829.155 kb on + strand, within Psyr_1626at 1829.155 kb on + strand, within Psyr_1626at 1829.155 kb on + strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.213 kb on + strand, within Psyr_1626at 1829.227 kb on + strand, within Psyr_1626at 1829.228 kb on - strand, within Psyr_1626at 1829.228 kb on - strand, within Psyr_1626at 1829.228 kb on - strand, within Psyr_1626at 1829.228 kb on - strand, within Psyr_1626at 1829.254 kb on - strand, within Psyr_1626at 1829.301 kb on + strand, within Psyr_1626at 1829.333 kb on + strand, within Psyr_1626at 1829.366 kb on - strand, within Psyr_1626at 1829.366 kb on - strand, within Psyr_1626at 1829.366 kb on - strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.612 kb on - strand, within Psyr_1626at 1829.612 kb on - strand, within Psyr_1626at 1829.612 kb on - strand, within Psyr_1626at 1829.612 kb on - strand, within Psyr_1626at 1829.788 kb on - strandat 1829.797 kb on + strandat 1829.798 kb on - strandat 1829.812 kb on + strandat 1830.405 kb on + strandat 1830.405 kb on + strandat 1830.405 kb on + strandat 1830.406 kb on - strandat 1830.406 kb on - strandat 1830.407 kb on + strandat 1830.407 kb on + strandat 1830.407 kb on + strandat 1830.408 kb on - strandat 1830.408 kb on - strandat 1830.444 kb on + strandat 1830.445 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Anethole 10 mM
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1,827,932 + Psyr_1625 0.67 +0.4
1,827,932 + Psyr_1625 0.67 +2.0
1,827,932 + Psyr_1625 0.67 -1.8
1,827,932 + Psyr_1625 0.67 +0.0
1,827,933 - Psyr_1625 0.67 +1.8
1,827,933 - Psyr_1625 0.67 +1.7
1,827,933 - Psyr_1625 0.67 +2.4
1,827,933 - Psyr_1625 0.67 -0.7
1,827,933 - Psyr_1625 0.67 +0.4
1,827,933 - Psyr_1625 0.67 +1.1
1,827,934 + Psyr_1625 0.67 +1.0
1,827,934 + Psyr_1625 0.67 -2.5
1,827,934 + Psyr_1625 0.67 -1.0
1,827,935 - Psyr_1625 0.67 +2.6
1,827,935 - Psyr_1625 0.67 +2.0
1,827,942 - Psyr_1625 0.67 -1.2
1,828,174 + Psyr_1625 0.76 +1.0
1,828,174 + Psyr_1625 0.76 +0.5
1,828,174 + Psyr_1625 0.76 +0.7
1,828,175 - Psyr_1625 0.76 +0.1
1,828,175 - Psyr_1625 0.76 +1.0
1,828,175 - Psyr_1625 0.76 -1.8
1,828,175 - Psyr_1625 0.76 +0.0
1,828,195 + Psyr_1625 0.77 -1.2
1,828,195 + Psyr_1625 0.77 +0.6
1,828,195 + Psyr_1625 0.77 -0.5
1,828,199 + Psyr_1625 0.77 +2.4
1,828,199 + Psyr_1625 0.77 +1.1
1,828,199 + Psyr_1625 0.77 +0.6
1,828,199 + Psyr_1625 0.77 +1.0
1,828,199 + Psyr_1625 0.77 +0.8
1,828,199 + Psyr_1625 0.77 -0.3
1,828,199 + Psyr_1625 0.77 -1.8
1,828,199 + Psyr_1625 0.77 +0.2
1,828,199 + Psyr_1625 0.77 -0.5
1,828,199 + Psyr_1625 0.77 -0.5
1,828,199 + Psyr_1625 0.77 -1.4
1,828,199 + Psyr_1625 0.77 +0.2
1,828,199 + Psyr_1625 0.77 +1.4
1,828,199 + Psyr_1625 0.77 -0.4
1,828,200 - Psyr_1625 0.77 +0.2
1,828,200 - Psyr_1625 0.77 -0.5
1,828,200 - Psyr_1625 0.77 -1.2
1,828,200 - Psyr_1625 0.77 +0.4
1,828,200 - Psyr_1625 0.77 -0.1
1,828,200 - Psyr_1625 0.77 -1.2
1,828,200 - Psyr_1625 0.77 +0.0
1,828,200 - Psyr_1625 0.77 -2.4
1,828,200 - Psyr_1625 0.77 +0.2
1,828,200 - Psyr_1625 0.77 +1.0
1,828,200 - Psyr_1625 0.77 +0.5
1,828,202 + Psyr_1625 0.77 +0.0
1,828,202 + Psyr_1625 0.77 -1.4
1,828,203 - Psyr_1625 0.77 -1.1
1,828,203 - Psyr_1625 0.77 +0.3
1,828,205 + Psyr_1625 0.77 -2.1
1,828,205 + Psyr_1625 0.77 -0.5
1,828,205 + Psyr_1625 0.77 -1.3
1,828,205 + Psyr_1625 0.77 -0.6
1,828,205 + Psyr_1625 0.77 +0.3
1,828,205 + Psyr_1625 0.77 +0.5
1,828,205 + Psyr_1625 0.77 -1.7
1,828,205 + Psyr_1625 0.77 +0.9
1,828,205 + Psyr_1625 0.77 -1.1
1,828,206 - Psyr_1625 0.77 +0.0
1,828,206 - Psyr_1625 0.77 +3.6
1,828,206 - Psyr_1625 0.77 +0.4
1,828,284 - Psyr_1625 0.80 +0.3
1,828,284 - Psyr_1625 0.80 -0.5
1,828,284 - Psyr_1625 0.80 +0.4
1,828,508 + Psyr_1625 0.88 -0.8
1,828,508 + Psyr_1625 0.88 +1.2
1,828,508 + Psyr_1625 0.88 -1.1
1,828,509 - Psyr_1625 0.88 +0.6
1,828,562 + +0.2
1,828,562 + +1.3
1,828,563 - -0.3
1,828,599 + +0.2
1,828,599 + -1.2
1,828,767 + +0.4
1,828,775 + -0.7
1,828,994 - +0.4
1,828,994 - +1.6
1,829,149 + Psyr_1626 0.27 +0.3
1,829,149 + Psyr_1626 0.27 +0.6
1,829,150 - Psyr_1626 0.28 -0.8
1,829,150 - Psyr_1626 0.28 +0.3
1,829,150 - Psyr_1626 0.28 +4.0
1,829,150 - Psyr_1626 0.28 +0.5
1,829,150 - Psyr_1626 0.28 +0.5
1,829,155 + Psyr_1626 0.28 +2.6
1,829,155 + Psyr_1626 0.28 +1.3
1,829,155 + Psyr_1626 0.28 -2.4
1,829,155 + Psyr_1626 0.28 -0.7
1,829,156 - Psyr_1626 0.28 +0.0
1,829,156 - Psyr_1626 0.28 +0.0
1,829,156 - Psyr_1626 0.28 +0.2
1,829,156 - Psyr_1626 0.28 +1.0
1,829,156 - Psyr_1626 0.28 -1.2
1,829,156 - Psyr_1626 0.28 -0.5
1,829,156 - Psyr_1626 0.28 -0.9
1,829,213 + Psyr_1626 0.35 +0.7
1,829,227 + Psyr_1626 0.37 -0.2
1,829,228 - Psyr_1626 0.37 -0.3
1,829,228 - Psyr_1626 0.37 +0.5
1,829,228 - Psyr_1626 0.37 -0.8
1,829,228 - Psyr_1626 0.37 -1.1
1,829,254 - Psyr_1626 0.40 -1.5
1,829,301 + Psyr_1626 0.45 +0.1
1,829,333 + Psyr_1626 0.49 -0.2
1,829,366 - Psyr_1626 0.53 +0.5
1,829,366 - Psyr_1626 0.53 +0.5
1,829,366 - Psyr_1626 0.53 -2.5
1,829,560 + Psyr_1626 0.76 -0.5
1,829,560 + Psyr_1626 0.76 -0.0
1,829,560 + Psyr_1626 0.76 -1.0
1,829,560 + Psyr_1626 0.76 +0.2
1,829,560 + Psyr_1626 0.76 -0.4
1,829,560 + Psyr_1626 0.76 +1.0
1,829,560 + Psyr_1626 0.76 -0.5
1,829,560 + Psyr_1626 0.76 +0.1
1,829,560 + Psyr_1626 0.76 -0.4
1,829,560 + Psyr_1626 0.76 +1.0
1,829,560 + Psyr_1626 0.76 +0.8
1,829,560 + Psyr_1626 0.76 -0.0
1,829,560 + Psyr_1626 0.76 -0.2
1,829,561 - Psyr_1626 0.76 +0.3
1,829,561 - Psyr_1626 0.76 +0.8
1,829,561 - Psyr_1626 0.76 +1.4
1,829,561 - Psyr_1626 0.76 +1.8
1,829,561 - Psyr_1626 0.76 -1.2
1,829,561 - Psyr_1626 0.76 -0.4
1,829,561 - Psyr_1626 0.76 +0.6
1,829,561 - Psyr_1626 0.76 -1.1
1,829,611 + Psyr_1626 0.82 +1.6
1,829,611 + Psyr_1626 0.82 -0.3
1,829,611 + Psyr_1626 0.82 +0.3
1,829,611 + Psyr_1626 0.82 -1.0
1,829,611 + Psyr_1626 0.82 +1.7
1,829,612 - Psyr_1626 0.82 +0.6
1,829,612 - Psyr_1626 0.82 -1.8
1,829,612 - Psyr_1626 0.82 -0.2
1,829,612 - Psyr_1626 0.82 +0.7
1,829,788 - +1.0
1,829,797 + +0.4
1,829,798 - +0.4
1,829,812 + -1.4
1,830,405 + -1.3
1,830,405 + -0.0
1,830,405 + +0.9
1,830,406 - -1.0
1,830,406 - -0.2
1,830,407 + +1.7
1,830,407 + +0.7
1,830,407 + +1.0
1,830,408 - -0.3
1,830,408 - -0.4
1,830,444 + -0.8
1,830,445 - +1.0

Or see this region's nucleotide sequence