Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0329

Experiment: KB with Anethole 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0328 and Psyr_0329 are separated by 162 nucleotidesPsyr_0329 and Psyr_0330 are separated by 466 nucleotides Psyr_0328: Psyr_0328 - NLPA lipoprotein, at 347,041 to 347,823 _0328 Psyr_0329: Psyr_0329 - Secretory lipase, at 347,986 to 349,239 _0329 Psyr_0330: Psyr_0330 - hypothetical protein, at 349,706 to 350,386 _0330 Position (kb) 347 348 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 346.988 kb on + strandat 346.989 kb on - strandat 346.989 kb on - strandat 346.991 kb on + strandat 346.991 kb on + strandat 346.992 kb on - strandat 346.992 kb on - strandat 347.218 kb on + strand, within Psyr_0328at 347.219 kb on - strand, within Psyr_0328at 347.222 kb on + strand, within Psyr_0328at 347.222 kb on + strand, within Psyr_0328at 347.222 kb on + strand, within Psyr_0328at 347.222 kb on + strand, within Psyr_0328at 347.223 kb on - strand, within Psyr_0328at 347.223 kb on - strand, within Psyr_0328at 347.223 kb on - strand, within Psyr_0328at 347.223 kb on - strand, within Psyr_0328at 347.223 kb on - strand, within Psyr_0328at 347.223 kb on - strand, within Psyr_0328at 347.223 kb on - strand, within Psyr_0328at 347.223 kb on - strand, within Psyr_0328at 347.266 kb on + strand, within Psyr_0328at 347.266 kb on + strand, within Psyr_0328at 347.266 kb on + strand, within Psyr_0328at 347.266 kb on + strand, within Psyr_0328at 347.266 kb on + strand, within Psyr_0328at 347.267 kb on - strand, within Psyr_0328at 347.267 kb on - strand, within Psyr_0328at 347.267 kb on - strand, within Psyr_0328at 347.267 kb on - strand, within Psyr_0328at 347.308 kb on - strand, within Psyr_0328at 347.339 kb on + strand, within Psyr_0328at 347.339 kb on + strand, within Psyr_0328at 347.339 kb on + strand, within Psyr_0328at 347.340 kb on - strand, within Psyr_0328at 347.374 kb on + strand, within Psyr_0328at 347.614 kb on - strand, within Psyr_0328at 347.620 kb on + strand, within Psyr_0328at 347.620 kb on + strand, within Psyr_0328at 347.621 kb on - strand, within Psyr_0328at 347.621 kb on - strand, within Psyr_0328at 347.621 kb on - strand, within Psyr_0328at 347.795 kb on - strandat 347.849 kb on - strandat 347.849 kb on - strandat 347.849 kb on - strandat 347.849 kb on - strandat 347.849 kb on - strandat 347.849 kb on - strandat 347.849 kb on - strandat 347.987 kb on + strandat 348.027 kb on + strandat 348.027 kb on + strandat 348.028 kb on - strandat 348.028 kb on - strandat 348.028 kb on - strandat 348.116 kb on + strand, within Psyr_0329at 348.116 kb on + strand, within Psyr_0329at 348.116 kb on + strand, within Psyr_0329at 348.116 kb on + strand, within Psyr_0329at 348.117 kb on - strand, within Psyr_0329at 348.207 kb on + strand, within Psyr_0329at 348.207 kb on + strand, within Psyr_0329at 348.207 kb on + strand, within Psyr_0329at 348.208 kb on - strand, within Psyr_0329at 348.211 kb on + strand, within Psyr_0329at 348.211 kb on + strand, within Psyr_0329at 348.401 kb on + strand, within Psyr_0329at 348.402 kb on - strand, within Psyr_0329at 348.402 kb on - strand, within Psyr_0329at 348.461 kb on + strand, within Psyr_0329at 348.462 kb on - strand, within Psyr_0329at 348.462 kb on - strand, within Psyr_0329at 348.462 kb on - strand, within Psyr_0329at 348.568 kb on - strand, within Psyr_0329at 348.568 kb on - strand, within Psyr_0329at 348.584 kb on + strand, within Psyr_0329at 348.584 kb on + strand, within Psyr_0329at 348.584 kb on + strand, within Psyr_0329at 348.585 kb on - strand, within Psyr_0329at 348.585 kb on - strand, within Psyr_0329at 348.596 kb on + strand, within Psyr_0329at 348.597 kb on - strand, within Psyr_0329at 348.597 kb on - strand, within Psyr_0329at 348.597 kb on - strand, within Psyr_0329at 348.597 kb on - strand, within Psyr_0329at 348.767 kb on + strand, within Psyr_0329at 348.871 kb on - strand, within Psyr_0329at 348.955 kb on + strand, within Psyr_0329at 348.990 kb on + strand, within Psyr_0329at 348.991 kb on - strand, within Psyr_0329at 348.991 kb on - strand, within Psyr_0329at 348.991 kb on - strand, within Psyr_0329at 348.993 kb on - strand, within Psyr_0329at 348.993 kb on - strand, within Psyr_0329at 348.993 kb on - strand, within Psyr_0329at 348.993 kb on - strand, within Psyr_0329at 348.999 kb on + strand, within Psyr_0329at 349.000 kb on - strand, within Psyr_0329at 349.086 kb on + strand, within Psyr_0329at 349.086 kb on + strand, within Psyr_0329at 349.086 kb on + strand, within Psyr_0329at 349.086 kb on + strand, within Psyr_0329at 349.086 kb on + strand, within Psyr_0329at 349.087 kb on - strand, within Psyr_0329at 349.087 kb on - strand, within Psyr_0329at 349.087 kb on - strand, within Psyr_0329at 349.087 kb on - strand, within Psyr_0329at 349.087 kb on - strand, within Psyr_0329at 349.087 kb on - strand, within Psyr_0329at 349.101 kb on - strand, within Psyr_0329at 349.192 kb on + strandat 349.192 kb on + strandat 349.192 kb on + strandat 349.193 kb on - strandat 349.193 kb on - strandat 349.193 kb on - strandat 349.236 kb on - strandat 349.244 kb on - strandat 349.291 kb on + strandat 349.292 kb on - strandat 349.292 kb on - strandat 349.292 kb on - strandat 349.306 kb on - strandat 349.371 kb on + strandat 349.372 kb on - strandat 349.378 kb on - strandat 349.445 kb on + strandat 349.483 kb on - strandat 349.513 kb on - strandat 349.548 kb on - strandat 349.571 kb on + strandat 349.635 kb on - strandat 349.638 kb on + strandat 349.639 kb on - strandat 349.639 kb on - strandat 349.639 kb on - strandat 349.673 kb on + strandat 349.674 kb on - strandat 349.691 kb on - strandat 349.705 kb on + strandat 349.774 kb on + strand, within Psyr_0330at 349.815 kb on + strand, within Psyr_0330at 349.938 kb on + strand, within Psyr_0330at 349.938 kb on + strand, within Psyr_0330at 349.938 kb on + strand, within Psyr_0330at 349.939 kb on - strand, within Psyr_0330at 349.939 kb on - strand, within Psyr_0330at 349.939 kb on - strand, within Psyr_0330at 349.939 kb on - strand, within Psyr_0330at 349.942 kb on + strand, within Psyr_0330at 349.943 kb on - strand, within Psyr_0330at 349.943 kb on - strand, within Psyr_0330at 350.004 kb on - strand, within Psyr_0330at 350.004 kb on - strand, within Psyr_0330at 350.031 kb on + strand, within Psyr_0330at 350.031 kb on + strand, within Psyr_0330at 350.066 kb on - strand, within Psyr_0330at 350.123 kb on + strand, within Psyr_0330

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Anethole 10 mM
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346,988 + +0.5
346,989 - -0.7
346,989 - +0.2
346,991 + +1.3
346,991 + -1.2
346,992 - +0.9
346,992 - -1.4
347,218 + Psyr_0328 0.23 +1.0
347,219 - Psyr_0328 0.23 -0.4
347,222 + Psyr_0328 0.23 -0.6
347,222 + Psyr_0328 0.23 -1.0
347,222 + Psyr_0328 0.23 -1.7
347,222 + Psyr_0328 0.23 -0.6
347,223 - Psyr_0328 0.23 +0.7
347,223 - Psyr_0328 0.23 +2.7
347,223 - Psyr_0328 0.23 +0.9
347,223 - Psyr_0328 0.23 +0.6
347,223 - Psyr_0328 0.23 -0.7
347,223 - Psyr_0328 0.23 +1.6
347,223 - Psyr_0328 0.23 -3.2
347,223 - Psyr_0328 0.23 -0.8
347,266 + Psyr_0328 0.29 -0.5
347,266 + Psyr_0328 0.29 +4.5
347,266 + Psyr_0328 0.29 -2.0
347,266 + Psyr_0328 0.29 -0.2
347,266 + Psyr_0328 0.29 -0.1
347,267 - Psyr_0328 0.29 +2.8
347,267 - Psyr_0328 0.29 +0.5
347,267 - Psyr_0328 0.29 +0.7
347,267 - Psyr_0328 0.29 -0.2
347,308 - Psyr_0328 0.34 +0.6
347,339 + Psyr_0328 0.38 +0.2
347,339 + Psyr_0328 0.38 +1.6
347,339 + Psyr_0328 0.38 -0.4
347,340 - Psyr_0328 0.38 -0.6
347,374 + Psyr_0328 0.43 +0.2
347,614 - Psyr_0328 0.73 -1.4
347,620 + Psyr_0328 0.74 +0.0
347,620 + Psyr_0328 0.74 -2.2
347,621 - Psyr_0328 0.74 +0.6
347,621 - Psyr_0328 0.74 -0.1
347,621 - Psyr_0328 0.74 +0.7
347,795 - +0.9
347,849 - +0.5
347,849 - -0.6
347,849 - -0.4
347,849 - +0.4
347,849 - +0.4
347,849 - -0.4
347,849 - -0.2
347,987 + +1.5
348,027 + +0.9
348,027 + -0.5
348,028 - -0.1
348,028 - -0.5
348,028 - -0.6
348,116 + Psyr_0329 0.10 -0.1
348,116 + Psyr_0329 0.10 -0.7
348,116 + Psyr_0329 0.10 -0.1
348,116 + Psyr_0329 0.10 -0.6
348,117 - Psyr_0329 0.10 -0.7
348,207 + Psyr_0329 0.18 +3.2
348,207 + Psyr_0329 0.18 +0.0
348,207 + Psyr_0329 0.18 -0.2
348,208 - Psyr_0329 0.18 -0.6
348,211 + Psyr_0329 0.18 +0.3
348,211 + Psyr_0329 0.18 -0.0
348,401 + Psyr_0329 0.33 +2.5
348,402 - Psyr_0329 0.33 -1.8
348,402 - Psyr_0329 0.33 +1.0
348,461 + Psyr_0329 0.38 -0.4
348,462 - Psyr_0329 0.38 +0.1
348,462 - Psyr_0329 0.38 +0.3
348,462 - Psyr_0329 0.38 +0.7
348,568 - Psyr_0329 0.46 -0.3
348,568 - Psyr_0329 0.46 +0.6
348,584 + Psyr_0329 0.48 +0.4
348,584 + Psyr_0329 0.48 -0.1
348,584 + Psyr_0329 0.48 -0.7
348,585 - Psyr_0329 0.48 +0.4
348,585 - Psyr_0329 0.48 -0.1
348,596 + Psyr_0329 0.49 +0.9
348,597 - Psyr_0329 0.49 -0.0
348,597 - Psyr_0329 0.49 +0.2
348,597 - Psyr_0329 0.49 +0.9
348,597 - Psyr_0329 0.49 +0.2
348,767 + Psyr_0329 0.62 -0.9
348,871 - Psyr_0329 0.71 -0.3
348,955 + Psyr_0329 0.77 +0.7
348,990 + Psyr_0329 0.80 +0.2
348,991 - Psyr_0329 0.80 +0.1
348,991 - Psyr_0329 0.80 +0.4
348,991 - Psyr_0329 0.80 +0.4
348,993 - Psyr_0329 0.80 -2.6
348,993 - Psyr_0329 0.80 +1.4
348,993 - Psyr_0329 0.80 -0.2
348,993 - Psyr_0329 0.80 -0.0
348,999 + Psyr_0329 0.81 -0.5
349,000 - Psyr_0329 0.81 +0.1
349,086 + Psyr_0329 0.88 -0.6
349,086 + Psyr_0329 0.88 -2.2
349,086 + Psyr_0329 0.88 -3.0
349,086 + Psyr_0329 0.88 +0.9
349,086 + Psyr_0329 0.88 +0.7
349,087 - Psyr_0329 0.88 -0.6
349,087 - Psyr_0329 0.88 -1.0
349,087 - Psyr_0329 0.88 -0.9
349,087 - Psyr_0329 0.88 -0.4
349,087 - Psyr_0329 0.88 -0.2
349,087 - Psyr_0329 0.88 -2.0
349,101 - Psyr_0329 0.89 +0.6
349,192 + +0.8
349,192 + +0.8
349,192 + -1.0
349,193 - -0.2
349,193 - -0.1
349,193 - +2.6
349,236 - +0.8
349,244 - +1.2
349,291 + -0.2
349,292 - +0.4
349,292 - +0.4
349,292 - +0.4
349,306 - -0.0
349,371 + -0.9
349,372 - -1.0
349,378 - -0.1
349,445 + -1.0
349,483 - +0.2
349,513 - +1.7
349,548 - +0.4
349,571 + -0.1
349,635 - -0.6
349,638 + +3.4
349,639 - -0.2
349,639 - +1.2
349,639 - +0.0
349,673 + +0.2
349,674 - -1.5
349,691 - -0.8
349,705 + -0.6
349,774 + Psyr_0330 0.10 +1.5
349,815 + Psyr_0330 0.16 -0.2
349,938 + Psyr_0330 0.34 +0.3
349,938 + Psyr_0330 0.34 -1.6
349,938 + Psyr_0330 0.34 -0.2
349,939 - Psyr_0330 0.34 -0.3
349,939 - Psyr_0330 0.34 +1.2
349,939 - Psyr_0330 0.34 -1.6
349,939 - Psyr_0330 0.34 +0.3
349,942 + Psyr_0330 0.35 +0.6
349,943 - Psyr_0330 0.35 -0.5
349,943 - Psyr_0330 0.35 +1.2
350,004 - Psyr_0330 0.44 -3.0
350,004 - Psyr_0330 0.44 +0.3
350,031 + Psyr_0330 0.48 +1.2
350,031 + Psyr_0330 0.48 -0.7
350,066 - Psyr_0330 0.53 -0.2
350,123 + Psyr_0330 0.61 -0.7

Or see this region's nucleotide sequence