Experiment: RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26915 and PS417_26920 are separated by 5 nucleotides PS417_26920 and PS417_26925 are separated by 91 nucleotides PS417_26925 and PS417_26930 overlap by 1 nucleotides
PS417_26915: PS417_26915 - GTPase SAR1, at 5,812,696 to 5,814,063
_26915
PS417_26920: PS417_26920 - hypothetical protein, at 5,814,069 to 5,814,608
_26920
PS417_26925: PS417_26925 - phosphohydrolase, at 5,814,700 to 5,815,254
_26925
PS417_26930: PS417_26930 - FAD-dependent oxidoreductase, at 5,815,254 to 5,816,387
_26930
Position (kb) 5814
5815
5816 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5813.752 kb on + strand, within PS417_26915 at 5813.753 kb on - strand, within PS417_26915 at 5813.753 kb on - strand, within PS417_26915 at 5813.753 kb on - strand, within PS417_26915 at 5814.077 kb on + strand at 5814.138 kb on - strand, within PS417_26920 at 5814.208 kb on + strand, within PS417_26920 at 5814.209 kb on - strand, within PS417_26920 at 5814.209 kb on - strand, within PS417_26920 at 5814.224 kb on - strand, within PS417_26920 at 5814.317 kb on - strand, within PS417_26920 at 5814.329 kb on + strand, within PS417_26920 at 5814.330 kb on - strand, within PS417_26920 at 5814.330 kb on - strand, within PS417_26920 at 5814.390 kb on - strand, within PS417_26920 at 5814.453 kb on + strand, within PS417_26920 at 5814.454 kb on - strand, within PS417_26920 at 5814.454 kb on - strand, within PS417_26920 at 5814.535 kb on + strand, within PS417_26920 at 5814.569 kb on + strand at 5814.601 kb on + strand at 5814.622 kb on + strand at 5814.644 kb on - strand at 5814.690 kb on + strand at 5814.691 kb on - strand at 5814.691 kb on - strand at 5814.870 kb on - strand, within PS417_26925 at 5814.908 kb on + strand, within PS417_26925 at 5814.908 kb on + strand, within PS417_26925 at 5814.908 kb on + strand, within PS417_26925 at 5814.909 kb on - strand, within PS417_26925 at 5814.909 kb on - strand, within PS417_26925 at 5815.074 kb on + strand, within PS417_26925 at 5815.074 kb on + strand, within PS417_26925 at 5815.075 kb on - strand, within PS417_26925 at 5815.075 kb on - strand, within PS417_26925 at 5815.075 kb on - strand, within PS417_26925 at 5815.191 kb on - strand, within PS417_26925 at 5815.214 kb on + strand at 5815.214 kb on + strand at 5815.215 kb on - strand at 5815.215 kb on - strand at 5815.215 kb on - strand at 5815.280 kb on + strand at 5815.281 kb on - strand at 5815.281 kb on - strand at 5815.397 kb on - strand, within PS417_26930 at 5815.511 kb on - strand, within PS417_26930 at 5815.528 kb on - strand, within PS417_26930 at 5815.885 kb on + strand, within PS417_26930 at 5815.885 kb on + strand, within PS417_26930 at 5815.885 kb on + strand, within PS417_26930 at 5815.885 kb on + strand, within PS417_26930 at 5815.886 kb on - strand, within PS417_26930 at 5815.915 kb on + strand, within PS417_26930 at 5816.008 kb on + strand, within PS417_26930 at 5816.050 kb on + strand, within PS417_26930 at 5816.126 kb on - strand, within PS417_26930
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x remove 5,813,752 + PS417_26915 0.77 +1.3 5,813,753 - PS417_26915 0.77 -0.1 5,813,753 - PS417_26915 0.77 +0.9 5,813,753 - PS417_26915 0.77 -0.2 5,814,077 + -0.7 5,814,138 - PS417_26920 0.13 +0.0 5,814,208 + PS417_26920 0.26 +0.3 5,814,209 - PS417_26920 0.26 -0.3 5,814,209 - PS417_26920 0.26 +0.1 5,814,224 - PS417_26920 0.29 +0.1 5,814,317 - PS417_26920 0.46 +1.0 5,814,329 + PS417_26920 0.48 +0.1 5,814,330 - PS417_26920 0.48 +0.3 5,814,330 - PS417_26920 0.48 -0.4 5,814,390 - PS417_26920 0.59 -0.0 5,814,453 + PS417_26920 0.71 -1.0 5,814,454 - PS417_26920 0.71 -2.6 5,814,454 - PS417_26920 0.71 +0.8 5,814,535 + PS417_26920 0.86 -1.8 5,814,569 + +0.7 5,814,601 + -0.0 5,814,622 + -0.3 5,814,644 - +1.1 5,814,690 + -0.6 5,814,691 - -0.6 5,814,691 - -0.2 5,814,870 - PS417_26925 0.31 +0.5 5,814,908 + PS417_26925 0.37 +0.7 5,814,908 + PS417_26925 0.37 -0.3 5,814,908 + PS417_26925 0.37 +0.3 5,814,909 - PS417_26925 0.38 +0.6 5,814,909 - PS417_26925 0.38 -0.5 5,815,074 + PS417_26925 0.67 -0.1 5,815,074 + PS417_26925 0.67 -0.4 5,815,075 - PS417_26925 0.68 +0.5 5,815,075 - PS417_26925 0.68 -0.1 5,815,075 - PS417_26925 0.68 +0.5 5,815,191 - PS417_26925 0.88 +0.4 5,815,214 + -1.4 5,815,214 + -0.0 5,815,215 - +0.7 5,815,215 - -0.1 5,815,215 - +0.1 5,815,280 + -0.4 5,815,281 - +3.3 5,815,281 - -0.6 5,815,397 - PS417_26930 0.13 -0.0 5,815,511 - PS417_26930 0.23 +0.1 5,815,528 - PS417_26930 0.24 -2.3 5,815,885 + PS417_26930 0.56 -0.2 5,815,885 + PS417_26930 0.56 -0.1 5,815,885 + PS417_26930 0.56 -0.3 5,815,885 + PS417_26930 0.56 -0.6 5,815,886 - PS417_26930 0.56 -1.1 5,815,915 + PS417_26930 0.58 -0.1 5,816,008 + PS417_26930 0.66 -1.3 5,816,050 + PS417_26930 0.70 +0.4 5,816,126 - PS417_26930 0.77 -1.2
Or see this region's nucleotide sequence