Experiment: RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01500 and PS417_01505 are separated by 554 nucleotides PS417_01505 and PS417_01510 are separated by 108 nucleotides PS417_01510 and PS417_01515 are separated by 12 nucleotides
PS417_01500: PS417_01500 - amino acid transporter, at 332,379 to 333,152
_01500
PS417_01505: PS417_01505 - gamma-aminobutyrate transporter, at 333,707 to 335,098
_01505
PS417_01510: PS417_01510 - hypothetical protein, at 335,207 to 335,620
_01510
PS417_01515: PS417_01515 - alpha/beta hydrolase, at 335,633 to 336,577
_01515
Position (kb) 333
334
335
336 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 333.077 kb on + strand at 333.087 kb on + strand at 333.103 kb on + strand at 333.104 kb on - strand at 333.218 kb on + strand at 333.218 kb on + strand at 333.219 kb on - strand at 333.219 kb on - strand at 333.219 kb on - strand at 333.219 kb on - strand at 333.219 kb on - strand at 333.219 kb on - strand at 333.223 kb on + strand at 333.223 kb on + strand at 333.224 kb on - strand at 333.224 kb on - strand at 333.224 kb on - strand at 333.427 kb on - strand at 333.427 kb on - strand at 333.513 kb on + strand at 333.513 kb on + strand at 333.712 kb on + strand at 333.712 kb on + strand at 333.715 kb on + strand at 333.715 kb on + strand at 333.716 kb on - strand at 333.716 kb on - strand at 333.716 kb on - strand at 333.947 kb on + strand, within PS417_01505 at 333.948 kb on - strand, within PS417_01505 at 333.948 kb on - strand, within PS417_01505 at 333.948 kb on - strand, within PS417_01505 at 333.948 kb on - strand, within PS417_01505 at 333.998 kb on + strand, within PS417_01505 at 333.998 kb on + strand, within PS417_01505 at 333.999 kb on - strand, within PS417_01505 at 333.999 kb on - strand, within PS417_01505 at 334.105 kb on + strand, within PS417_01505 at 334.409 kb on - strand, within PS417_01505 at 334.451 kb on + strand, within PS417_01505 at 334.451 kb on + strand, within PS417_01505 at 334.452 kb on - strand, within PS417_01505 at 334.452 kb on - strand, within PS417_01505 at 334.516 kb on - strand, within PS417_01505 at 334.622 kb on + strand, within PS417_01505 at 334.622 kb on + strand, within PS417_01505 at 334.623 kb on - strand, within PS417_01505 at 334.709 kb on + strand, within PS417_01505 at 334.710 kb on - strand, within PS417_01505 at 334.763 kb on + strand at 334.763 kb on + strand at 334.764 kb on - strand, within PS417_01505 at 334.829 kb on + strand, within PS417_01505 at 334.928 kb on + strand, within PS417_01505 at 334.928 kb on + strand, within PS417_01505 at 334.928 kb on + strand, within PS417_01505 at 334.991 kb on - strand at 335.088 kb on + strand at 335.097 kb on - strand at 335.100 kb on + strand at 335.305 kb on + strand, within PS417_01510 at 335.306 kb on - strand, within PS417_01510 at 335.347 kb on + strand, within PS417_01510 at 335.689 kb on + strand at 335.689 kb on + strand at 335.752 kb on - strand, within PS417_01515 at 335.795 kb on + strand at 335.796 kb on - strand, within PS417_01515 at 335.796 kb on - strand, within PS417_01515 at 335.844 kb on + strand, within PS417_01515 at 335.845 kb on - strand, within PS417_01515 at 335.852 kb on + strand, within PS417_01515 at 335.870 kb on + strand, within PS417_01515 at 335.941 kb on + strand, within PS417_01515
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x remove 333,077 + -0.6 333,087 + +0.9 333,103 + +0.4 333,104 - -2.2 333,218 + -0.8 333,218 + -0.2 333,219 - +0.4 333,219 - -1.0 333,219 - -0.8 333,219 - +1.6 333,219 - +1.0 333,219 - -0.8 333,223 + -0.1 333,223 + +0.3 333,224 - +0.9 333,224 - +0.3 333,224 - -0.7 333,427 - -0.5 333,427 - +1.6 333,513 + -0.6 333,513 + +0.3 333,712 + -0.5 333,712 + -0.6 333,715 + -0.3 333,715 + -0.0 333,716 - +0.4 333,716 - -0.5 333,716 - -0.4 333,947 + PS417_01505 0.17 -0.4 333,948 - PS417_01505 0.17 -0.3 333,948 - PS417_01505 0.17 +0.2 333,948 - PS417_01505 0.17 +2.3 333,948 - PS417_01505 0.17 +0.3 333,998 + PS417_01505 0.21 -1.6 333,998 + PS417_01505 0.21 +1.1 333,999 - PS417_01505 0.21 -0.7 333,999 - PS417_01505 0.21 -0.2 334,105 + PS417_01505 0.29 +0.4 334,409 - PS417_01505 0.50 -0.0 334,451 + PS417_01505 0.53 -1.0 334,451 + PS417_01505 0.53 -0.9 334,452 - PS417_01505 0.54 -0.5 334,452 - PS417_01505 0.54 +0.8 334,516 - PS417_01505 0.58 -0.2 334,622 + PS417_01505 0.66 -0.8 334,622 + PS417_01505 0.66 +0.1 334,623 - PS417_01505 0.66 +0.1 334,709 + PS417_01505 0.72 +2.6 334,710 - PS417_01505 0.72 +0.6 334,763 + -1.3 334,763 + -1.0 334,764 - PS417_01505 0.76 -0.7 334,829 + PS417_01505 0.81 +0.4 334,928 + PS417_01505 0.88 -1.3 334,928 + PS417_01505 0.88 +1.0 334,928 + PS417_01505 0.88 +0.1 334,991 - -0.2 335,088 + -0.4 335,097 - +0.3 335,100 + -1.6 335,305 + PS417_01510 0.24 +0.8 335,306 - PS417_01510 0.24 -0.0 335,347 + PS417_01510 0.34 +0.3 335,689 + +1.0 335,689 + +0.1 335,752 - PS417_01515 0.13 +0.3 335,795 + +3.0 335,796 - PS417_01515 0.17 -0.2 335,796 - PS417_01515 0.17 -1.2 335,844 + PS417_01515 0.22 +0.1 335,845 - PS417_01515 0.22 -0.6 335,852 + PS417_01515 0.23 +0.8 335,870 + PS417_01515 0.25 +0.1 335,941 + PS417_01515 0.33 -0.1
Or see this region's nucleotide sequence