Strain Fitness in Pseudomonas simiae WCS417 around PS417_07040

Experiment: RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x
1,551,115	-				+1.2
1,551,170	+				-0.0
1,551,225	+		PS417_07035	0.10	-0.1
1,551,225	+		PS417_07035	0.10	-0.4
1,551,225	+		PS417_07035	0.10	-1.2
1,551,226	-		PS417_07035	0.11	+0.4
1,551,226	-		PS417_07035	0.11	+0.8
1,551,283	-		PS417_07035	0.19	-1.5
1,551,366	+		PS417_07035	0.31	-0.0
1,551,367	-		PS417_07035	0.31	-0.6
1,551,443	+		PS417_07035	0.42	+0.4
1,551,447	+		PS417_07035	0.42	+0.5
1,551,447	+		PS417_07035	0.42	-2.0
1,551,447	+		PS417_07035	0.42	+0.8
1,551,447	+		PS417_07035	0.42	+0.8
1,551,447	+		PS417_07035	0.42	-0.3
1,551,448	-		PS417_07035	0.43	+0.3
1,551,448	-		PS417_07035	0.43	-0.6
1,551,448	-		PS417_07035	0.43	-0.5
1,551,449	+		PS417_07035	0.43	-0.8
1,551,946	-				+0.3
1,551,989	-				+0.3
1,551,989	-				-0.1
1,552,053	+				-0.3
1,552,054	-				+0.1
1,552,054	-				+1.9
1,552,231	+				-0.6
1,552,231	+				+0.2
1,552,232	-				+0.3
1,552,249	+				-0.4
1,552,249	+				+0.0
1,552,250	-				-1.8
1,552,250	-				-0.7
1,552,250	-				-0.5
1,552,251	+				-1.6
1,552,252	-				-0.6
1,552,252	-				+0.3
1,552,313	+		PS417_07040	0.13	+0.4
1,552,314	-		PS417_07040	0.13	-0.1
1,552,358	+		PS417_07040	0.15	-0.9
1,552,358	+		PS417_07040	0.15	-0.0
1,552,358	+		PS417_07040	0.15	-0.5
1,552,359	-		PS417_07040	0.15	+0.8
1,552,359	-		PS417_07040	0.15	-0.4
1,552,359	-		PS417_07040	0.15	-1.5
1,552,363	+		PS417_07040	0.15	-0.7
1,552,364	-		PS417_07040	0.15	-0.3
1,552,364	-		PS417_07040	0.15	+0.5
1,552,395	-		PS417_07040	0.17	+0.2
1,552,447	-		PS417_07040	0.19	-0.2
1,552,548	-		PS417_07040	0.24	-0.5
1,552,618	-		PS417_07040	0.28	-0.8
1,552,637	+		PS417_07040	0.29	+0.2
1,552,637	+		PS417_07040	0.29	+0.6
1,552,637	+		PS417_07040	0.29	+1.0
1,552,648	-		PS417_07040	0.29	-1.2
1,552,648	-		PS417_07040	0.29	+0.1
1,552,752	+		PS417_07040	0.34	+0.2
1,552,769	+		PS417_07040	0.35	-0.0
1,552,796	+				+0.8
1,552,809	-		PS417_07040	0.37	+0.4
1,552,811	+		PS417_07040	0.37	+2.2
1,552,852	+		PS417_07040	0.39	+0.0
1,552,852	+		PS417_07040	0.39	+0.2
1,552,853	-		PS417_07040	0.39	+0.1
1,552,863	+		PS417_07040	0.40	-1.0
1,552,911	+		PS417_07040	0.42	-0.3
1,552,912	-		PS417_07040	0.42	-0.3
1,552,936	-		PS417_07040	0.43	-0.4
1,552,973	+		PS417_07040	0.45	-0.9
1,552,973	+		PS417_07040	0.45	+1.5
1,552,973	+		PS417_07040	0.45	-1.1
1,552,973	+		PS417_07040	0.45	+0.3
1,552,974	-		PS417_07040	0.45	+0.2
1,552,974	-				+0.8
1,552,992	+		PS417_07040	0.46	-0.0
1,552,993	-		PS417_07040	0.46	+0.9
1,552,993	-		PS417_07040	0.46	-0.5
1,552,993	-				+1.1
1,552,994	+		PS417_07040	0.46	+0.6
1,552,995	-		PS417_07040	0.46	-0.1
1,552,995	-		PS417_07040	0.46	-0.6
1,553,038	+		PS417_07040	0.48	-0.9
1,553,038	+		PS417_07040	0.48	+0.3
1,553,038	+		PS417_07040	0.48	-0.0
1,553,039	-		PS417_07040	0.49	-0.5
1,553,039	-		PS417_07040	0.49	-0.4
1,553,039	-		PS417_07040	0.49	-0.1
1,553,039	-		PS417_07040	0.49	+0.0
1,553,053	+		PS417_07040	0.49	-1.2
1,553,054	-		PS417_07040	0.49	-0.7
1,553,054	-		PS417_07040	0.49	-0.3
1,553,132	+		PS417_07040	0.53	-0.1
1,553,132	+		PS417_07040	0.53	-0.3
1,553,132	+		PS417_07040	0.53	+0.5
1,553,132	+		PS417_07040	0.53	+1.2
1,553,133	-		PS417_07040	0.53	-0.3
1,553,159	+		PS417_07040	0.54	-0.5
1,553,159	+		PS417_07040	0.54	-0.5
1,553,160	-		PS417_07040	0.55	+0.5
1,553,218	+		PS417_07040	0.57	-0.4
1,553,299	+		PS417_07040	0.61	-1.0
1,553,300	-		PS417_07040	0.61	+0.2
1,553,347	-		PS417_07040	0.64	-0.8
1,553,365	-		PS417_07040	0.65	-0.8
1,553,366	+				+1.8
1,553,366	+		PS417_07040	0.65	+1.8
1,553,366	+		PS417_07040	0.65	+0.8
1,553,366	+		PS417_07040	0.65	-0.3
1,553,366	+		PS417_07040	0.65	-0.9
1,553,366	+		PS417_07040	0.65	-0.1
1,553,366	+		PS417_07040	0.65	-0.4
1,553,366	+		PS417_07040	0.65	-0.7
1,553,366	+		PS417_07040	0.65	-1.0
1,553,367	-		PS417_07040	0.65	-0.2
1,553,367	-		PS417_07040	0.65	-0.5
1,553,367	-		PS417_07040	0.65	-0.7
1,553,436	-		PS417_07040	0.68	-1.2
1,553,436	-		PS417_07040	0.68	-1.0
1,553,534	+		PS417_07040	0.73	+1.3
1,553,535	-		PS417_07040	0.73	-0.2
1,553,535	-		PS417_07040	0.73	-0.0
1,553,627	+		PS417_07040	0.78	-0.7
1,553,627	+		PS417_07040	0.78	-0.4
1,553,628	-				-0.2
1,553,643	-		PS417_07040	0.78	+0.2
1,553,643	-		PS417_07040	0.78	+1.1
1,553,775	-		PS417_07040	0.85	-0.3
1,553,836	+		PS417_07040	0.88	-0.6
1,553,836	+		PS417_07040	0.88	+0.1
1,553,836	+		PS417_07040	0.88	+0.0
1,553,837	-				+1.6
1,553,837	-		PS417_07040	0.88	-0.6
1,553,869	+		PS417_07040	0.90	-0.1
1,553,869	+		PS417_07040	0.90	-0.8
1,553,870	-		PS417_07040	0.90	-0.9
1,553,870	-		PS417_07040	0.90	-0.6
1,553,870	-		PS417_07040	0.90	-0.3
1,553,969	+				-0.2
1,554,090	-				+0.8
1,554,110	+				+0.3
1,554,198	-				+0.6
1,554,232	+				+0.3
1,554,232	+				-0.4
1,554,233	-				+0.7
1,554,233	-				-0.4
1,554,233	-				+0.9
1,554,233	-				-0.0
1,554,233	-				+0.5
1,554,246	+				+0.4
1,554,246	+				-0.9
1,554,247	-				+1.0
1,554,247	-				-0.5
1,554,247	-				+0.8
1,554,247	-				-0.3
1,554,247	-				+0.5
1,554,247	-				-0.1
1,554,251	-				-2.8
1,554,251	-				+0.5
1,554,257	-				-2.2
1,554,266	+				-0.6
1,554,267	-				+0.1
1,554,272	+				+0.8
1,554,272	+				-0.8
1,554,272	+				-0.3
1,554,273	-				-0.0
1,554,281	+				-0.9
1,554,281	+				-0.8
1,554,284	+				-0.1
1,554,284	+				-0.8
1,554,284	+				-0.4
1,554,285	-				-0.7
1,554,384	-				-0.2
1,554,384	-				-0.2
1,554,384	-				-0.2
1,554,404	+				+1.0
1,554,430	+				-0.2
1,554,430	+				+0.7
1,554,431	-				+0.2
1,554,520	+		PS417_07045	0.13	+1.6
1,554,682	-		PS417_07045	0.21	-1.2
1,554,682	-		PS417_07045	0.21	-0.3
1,554,682	-		PS417_07045	0.21	+0.2
1,554,699	+				+2.4
1,554,699	+		PS417_07045	0.22	-0.8
1,554,699	+		PS417_07045	0.22	-0.0
1,554,700	-		PS417_07045	0.22	-0.6
1,554,700	-		PS417_07045	0.22	+0.8
1,554,700	-		PS417_07045	0.22	-0.1
1,554,719	+		PS417_07045	0.23	+0.8
1,554,720	-				-0.5
1,554,726	-		PS417_07045	0.23	-0.0
1,554,728	+		PS417_07045	0.23	-0.3
1,554,728	+		PS417_07045	0.23	+1.8
1,554,728	+		PS417_07045	0.23	+0.9
1,554,759	+		PS417_07045	0.25	-0.8
1,554,783	+		PS417_07045	0.26	-0.6
1,554,784	-		PS417_07045	0.26	-0.0
1,554,784	-		PS417_07045	0.26	+1.0
1,554,784	-		PS417_07045	0.26	+0.3
1,554,784	-		PS417_07045	0.26	+0.4
1,554,784	-		PS417_07045	0.26	-0.2
1,554,784	-		PS417_07045	0.26	-0.2
1,554,784	-		PS417_07045	0.26	-0.3
1,554,787	+		PS417_07045	0.26	-0.1
1,554,788	-		PS417_07045	0.26	+0.0
1,554,788	-		PS417_07045	0.26	+0.2
1,554,852	+				-2.2
1,554,852	+		PS417_07045	0.30	-0.0
1,554,853	-		PS417_07045	0.30	-0.1
1,554,853	-		PS417_07045	0.30	-0.0
1,554,857	+		PS417_07045	0.30	-0.4
1,554,857	+		PS417_07045	0.30	-0.5
1,554,858	-		PS417_07045	0.30	+0.8
1,554,858	-		PS417_07045	0.30	-1.2
1,554,858	-		PS417_07045	0.30	-0.2
1,554,858	-		PS417_07045	0.30	-0.1
1,554,971	+				-0.5
1,554,972	-		PS417_07045	0.36	+0.5
1,554,972	-		PS417_07045	0.36	+0.0
1,555,026	+		PS417_07045	0.38	-0.7
1,555,026	+		PS417_07045	0.38	-0.4
1,555,026	+		PS417_07045	0.38	+1.6
1,555,027	-		PS417_07045	0.38	+0.9