Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3508 and Atu3509 are separated by 85 nucleotides Atu3509 and Atu3510 overlap by 4 nucleotides Atu3510 and Atu3511 are separated by 24 nucleotides
Atu3508: Atu3508 - 3-demethylubiquinone-9 3-methyltransferase, at 558,539 to 559,291
Atu3508
Atu3509: Atu3509 - hypothetical protein, at 559,377 to 559,805
Atu3509
Atu3510: Atu3510 - amidohydrolase, at 559,802 to 560,662
Atu3510
Atu3511: Atu3511 - glutaredoxin, at 560,687 to 560,989
Atu3511
Position (kb) 559
560 Strain fitness (log2 ratio) -1
0
1 at 558.434 kb on - strand at 559.424 kb on - strand, within Atu3509 at 559.437 kb on + strand, within Atu3509 at 559.445 kb on - strand, within Atu3509 at 559.680 kb on - strand, within Atu3509 at 559.824 kb on + strand at 559.852 kb on - strand at 559.966 kb on - strand, within Atu3510 at 560.136 kb on + strand, within Atu3510 at 560.144 kb on - strand, within Atu3510 at 560.320 kb on - strand, within Atu3510 at 560.508 kb on + strand, within Atu3510 at 560.650 kb on + strand at 560.658 kb on + strand at 560.672 kb on + strand at 560.679 kb on - strand at 560.758 kb on - strand, within Atu3511 at 560.774 kb on + strand, within Atu3511
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 558,434 - +1.1 559,424 - Atu3509 0.11 -0.5 559,437 + Atu3509 0.14 -0.1 559,445 - Atu3509 0.16 -1.1 559,680 - Atu3509 0.71 -1.5 559,824 + +0.6 559,852 - -0.3 559,966 - Atu3510 0.19 +1.1 560,136 + Atu3510 0.39 +0.4 560,144 - Atu3510 0.40 +0.1 560,320 - Atu3510 0.60 -0.6 560,508 + Atu3510 0.82 +0.1 560,650 + +0.6 560,658 + -1.1 560,672 + -0.8 560,679 - +1.1 560,758 - Atu3511 0.23 -0.4 560,774 + Atu3511 0.29 -0.1
Or see this region's nucleotide sequence