Strain Fitness in Agrobacterium fabrum C58 around Atu3403

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3402 and Atu3403 are separated by 15 nucleotidesAtu3403 and Atu3404 are separated by 90 nucleotides Atu3402: Atu3402 - 3-isopropylmalate dehydrogenase, at 446,610 to 447,653 Atu3402 Atu3403: Atu3403 - succinate semialdehyde dehydrogenase, at 447,669 to 449,126 Atu3403 Atu3404: Atu3404 - oxidoreductase, at 449,217 to 450,491 Atu3404 Position (kb) 447 448 449 450Strain fitness (log2 ratio) -2 -1 0 1 2at 446.675 kb on - strandat 446.704 kb on + strandat 446.736 kb on + strand, within Atu3402at 446.744 kb on - strand, within Atu3402at 446.749 kb on - strand, within Atu3402at 446.907 kb on + strand, within Atu3402at 446.933 kb on + strand, within Atu3402at 447.056 kb on - strand, within Atu3402at 447.115 kb on + strand, within Atu3402at 447.207 kb on + strand, within Atu3402at 447.243 kb on + strand, within Atu3402at 447.282 kb on - strand, within Atu3402at 447.316 kb on + strand, within Atu3402at 447.316 kb on + strand, within Atu3402at 447.324 kb on - strand, within Atu3402at 447.336 kb on + strand, within Atu3402at 447.336 kb on + strand, within Atu3402at 447.384 kb on - strand, within Atu3402at 447.442 kb on + strand, within Atu3402at 447.442 kb on + strand, within Atu3402at 447.447 kb on + strand, within Atu3402at 447.472 kb on + strand, within Atu3402at 447.495 kb on - strand, within Atu3402at 447.605 kb on + strandat 447.605 kb on + strandat 447.611 kb on + strandat 447.633 kb on - strandat 447.783 kb on + strandat 447.882 kb on - strand, within Atu3403at 447.894 kb on - strand, within Atu3403at 447.963 kb on - strand, within Atu3403at 448.072 kb on - strand, within Atu3403at 448.072 kb on - strand, within Atu3403at 448.098 kb on - strand, within Atu3403at 448.213 kb on - strand, within Atu3403at 448.213 kb on - strand, within Atu3403at 448.369 kb on + strand, within Atu3403at 448.412 kb on - strand, within Atu3403at 448.412 kb on - strand, within Atu3403at 448.550 kb on + strand, within Atu3403at 448.558 kb on - strand, within Atu3403at 448.721 kb on + strand, within Atu3403at 448.735 kb on + strand, within Atu3403at 448.762 kb on + strand, within Atu3403at 448.896 kb on + strand, within Atu3403at 448.910 kb on - strand, within Atu3403at 448.930 kb on - strand, within Atu3403at 449.022 kb on + strandat 449.030 kb on - strandat 449.072 kb on - strandat 449.109 kb on - strandat 449.128 kb on - strandat 449.266 kb on + strandat 449.266 kb on + strandat 449.274 kb on - strandat 449.304 kb on + strandat 449.304 kb on + strandat 449.304 kb on + strandat 449.338 kb on + strandat 449.347 kb on + strand, within Atu3404at 449.374 kb on + strand, within Atu3404at 449.374 kb on + strand, within Atu3404at 449.374 kb on + strand, within Atu3404at 449.382 kb on - strand, within Atu3404at 449.382 kb on - strand, within Atu3404at 449.473 kb on - strand, within Atu3404at 449.607 kb on + strand, within Atu3404at 449.624 kb on + strand, within Atu3404at 449.632 kb on - strand, within Atu3404at 449.674 kb on - strand, within Atu3404at 449.697 kb on - strand, within Atu3404at 449.697 kb on - strand, within Atu3404at 449.780 kb on + strand, within Atu3404at 449.780 kb on + strand, within Atu3404at 449.788 kb on - strand, within Atu3404at 449.794 kb on + strand, within Atu3404at 449.815 kb on + strand, within Atu3404at 449.845 kb on + strand, within Atu3404at 449.864 kb on + strand, within Atu3404at 449.872 kb on - strand, within Atu3404at 449.872 kb on - strand, within Atu3404at 449.927 kb on - strand, within Atu3404at 450.123 kb on - strand, within Atu3404

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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446,675 - +0.3
446,704 + -0.7
446,736 + Atu3402 0.12 -0.0
446,744 - Atu3402 0.13 -0.0
446,749 - Atu3402 0.13 +0.0
446,907 + Atu3402 0.28 +0.0
446,933 + Atu3402 0.31 +0.4
447,056 - Atu3402 0.43 -1.2
447,115 + Atu3402 0.48 -0.5
447,207 + Atu3402 0.57 +0.8
447,243 + Atu3402 0.61 +1.6
447,282 - Atu3402 0.64 -0.3
447,316 + Atu3402 0.68 +0.8
447,316 + Atu3402 0.68 -0.7
447,324 - Atu3402 0.68 -0.2
447,336 + Atu3402 0.70 -0.1
447,336 + Atu3402 0.70 -1.0
447,384 - Atu3402 0.74 +0.4
447,442 + Atu3402 0.80 -0.2
447,442 + Atu3402 0.80 +0.1
447,447 + Atu3402 0.80 -0.2
447,472 + Atu3402 0.83 -0.6
447,495 - Atu3402 0.85 -0.4
447,605 + -0.1
447,605 + -0.3
447,611 + -0.2
447,633 - +0.2
447,783 + +0.4
447,882 - Atu3403 0.15 -0.1
447,894 - Atu3403 0.15 +0.0
447,963 - Atu3403 0.20 +0.3
448,072 - Atu3403 0.28 +0.5
448,072 - Atu3403 0.28 -0.4
448,098 - Atu3403 0.29 -0.0
448,213 - Atu3403 0.37 -0.4
448,213 - Atu3403 0.37 -0.6
448,369 + Atu3403 0.48 +0.1
448,412 - Atu3403 0.51 -0.8
448,412 - Atu3403 0.51 -0.1
448,550 + Atu3403 0.60 +1.0
448,558 - Atu3403 0.61 +0.0
448,721 + Atu3403 0.72 -0.3
448,735 + Atu3403 0.73 +0.2
448,762 + Atu3403 0.75 -0.2
448,896 + Atu3403 0.84 -0.1
448,910 - Atu3403 0.85 -1.1
448,930 - Atu3403 0.86 +0.9
449,022 + -1.9
449,030 - +0.2
449,072 - +0.2
449,109 - +1.2
449,128 - -0.1
449,266 + -0.5
449,266 + +0.3
449,274 - -1.4
449,304 + -0.5
449,304 + +2.7
449,304 + +0.3
449,338 + -0.1
449,347 + Atu3404 0.10 +0.6
449,374 + Atu3404 0.12 +0.2
449,374 + Atu3404 0.12 +0.6
449,374 + Atu3404 0.12 +0.2
449,382 - Atu3404 0.13 -0.3
449,382 - Atu3404 0.13 +0.0
449,473 - Atu3404 0.20 -0.4
449,607 + Atu3404 0.31 +0.1
449,624 + Atu3404 0.32 +0.3
449,632 - Atu3404 0.33 -0.9
449,674 - Atu3404 0.36 -0.1
449,697 - Atu3404 0.38 -0.3
449,697 - Atu3404 0.38 -0.2
449,780 + Atu3404 0.44 -0.1
449,780 + Atu3404 0.44 -0.0
449,788 - Atu3404 0.45 +0.1
449,794 + Atu3404 0.45 -0.4
449,815 + Atu3404 0.47 -1.4
449,845 + Atu3404 0.49 +0.4
449,864 + Atu3404 0.51 +0.7
449,872 - Atu3404 0.51 -0.1
449,872 - Atu3404 0.51 -0.4
449,927 - Atu3404 0.56 +1.8
450,123 - Atu3404 0.71 -0.6

Or see this region's nucleotide sequence