Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3162 and Atu3163 are separated by 114 nucleotides Atu3163 and Atu3164 are separated by 16 nucleotides
Atu3162: Atu3162 - LacI family transcriptional regulator, at 171,019 to 172,032
Atu3162
Atu3163: Atu3163 - zinc-binding dehydrogenase, at 172,147 to 173,157
Atu3163
Atu3164: Atu3164 - sorbitol dehydrogenase, at 173,174 to 173,944
Atu3164
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1 at 171.201 kb on + strand, within Atu3162 at 171.253 kb on - strand, within Atu3162 at 171.335 kb on + strand, within Atu3162 at 171.338 kb on - strand, within Atu3162 at 171.338 kb on - strand, within Atu3162 at 171.415 kb on - strand, within Atu3162 at 171.448 kb on + strand, within Atu3162 at 171.487 kb on - strand, within Atu3162 at 171.487 kb on - strand, within Atu3162 at 171.595 kb on - strand, within Atu3162 at 171.713 kb on - strand, within Atu3162 at 171.774 kb on - strand, within Atu3162 at 171.811 kb on - strand, within Atu3162 at 171.890 kb on - strand, within Atu3162 at 172.086 kb on + strand at 172.094 kb on - strand at 172.396 kb on + strand, within Atu3163 at 172.396 kb on + strand, within Atu3163 at 172.404 kb on - strand, within Atu3163 at 172.516 kb on + strand, within Atu3163 at 172.663 kb on + strand, within Atu3163 at 172.751 kb on - strand, within Atu3163 at 172.785 kb on - strand, within Atu3163 at 172.801 kb on - strand, within Atu3163 at 172.854 kb on - strand, within Atu3163 at 172.885 kb on + strand, within Atu3163 at 172.889 kb on + strand, within Atu3163 at 172.928 kb on + strand, within Atu3163 at 172.928 kb on + strand, within Atu3163 at 172.958 kb on + strand, within Atu3163 at 173.006 kb on - strand, within Atu3163 at 173.031 kb on + strand, within Atu3163 at 173.052 kb on + strand, within Atu3163 at 173.060 kb on + strand at 173.060 kb on + strand at 173.060 kb on + strand at 173.068 kb on - strand at 173.068 kb on - strand at 173.188 kb on - strand at 173.231 kb on + strand at 173.251 kb on - strand, within Atu3164 at 173.301 kb on + strand, within Atu3164 at 173.309 kb on - strand, within Atu3164 at 173.396 kb on + strand, within Atu3164 at 173.401 kb on + strand, within Atu3164 at 173.574 kb on + strand, within Atu3164 at 173.608 kb on - strand, within Atu3164 at 173.747 kb on + strand, within Atu3164 at 173.775 kb on - strand, within Atu3164 at 173.776 kb on - strand, within Atu3164 at 173.793 kb on + strand, within Atu3164 at 173.925 kb on + strand at 173.933 kb on - strand at 173.941 kb on - strand at 174.021 kb on - strand at 174.023 kb on - strand at 174.023 kb on - strand at 174.117 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 171,201 + Atu3162 0.18 -0.6 171,253 - Atu3162 0.23 -0.0 171,335 + Atu3162 0.31 +0.6 171,338 - Atu3162 0.31 +1.0 171,338 - Atu3162 0.31 +0.2 171,415 - Atu3162 0.39 -0.0 171,448 + Atu3162 0.42 -0.2 171,487 - Atu3162 0.46 -0.4 171,487 - Atu3162 0.46 -0.1 171,595 - Atu3162 0.57 +0.2 171,713 - Atu3162 0.68 +0.5 171,774 - Atu3162 0.74 -0.3 171,811 - Atu3162 0.78 -0.2 171,890 - Atu3162 0.86 +0.7 172,086 + -0.1 172,094 - -0.3 172,396 + Atu3163 0.25 +0.1 172,396 + Atu3163 0.25 -0.1 172,404 - Atu3163 0.25 -0.3 172,516 + Atu3163 0.36 +1.0 172,663 + Atu3163 0.51 -0.4 172,751 - Atu3163 0.60 -0.5 172,785 - Atu3163 0.63 +0.1 172,801 - Atu3163 0.65 +1.6 172,854 - Atu3163 0.70 -0.2 172,885 + Atu3163 0.73 +0.0 172,889 + Atu3163 0.73 -0.2 172,928 + Atu3163 0.77 +0.4 172,928 + Atu3163 0.77 -0.8 172,958 + Atu3163 0.80 -1.4 173,006 - Atu3163 0.85 -0.9 173,031 + Atu3163 0.87 -0.4 173,052 + Atu3163 0.90 +0.2 173,060 + -0.2 173,060 + -0.3 173,060 + -0.7 173,068 - -0.4 173,068 - +0.3 173,188 - -0.5 173,231 + -1.1 173,251 - Atu3164 0.10 -0.1 173,301 + Atu3164 0.16 +0.5 173,309 - Atu3164 0.18 -0.6 173,396 + Atu3164 0.29 -0.3 173,401 + Atu3164 0.29 -1.1 173,574 + Atu3164 0.52 -0.4 173,608 - Atu3164 0.56 -1.8 173,747 + Atu3164 0.74 -0.8 173,775 - Atu3164 0.78 -0.3 173,776 - Atu3164 0.78 -0.5 173,793 + Atu3164 0.80 -0.9 173,925 + -0.7 173,933 - -0.8 173,941 - -1.2 174,021 - -0.1 174,023 - +0.5 174,023 - -0.9 174,117 + -0.7
Or see this region's nucleotide sequence