Strain Fitness in Agrobacterium fabrum C58 around Atu2652

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2651 and Atu2652 are separated by 73 nucleotidesAtu2652 and Atu2653 are separated by 4 nucleotidesAtu2653 and Atu2655 are separated by 73 nucleotides Atu2651: Atu2651 - O-sialoglycoprotein endopeptidase, at 2,634,510 to 2,635,607 Atu2651 Atu2652: Atu2652 - porphobilinogen deaminase, at 2,635,681 to 2,636,610 Atu2652 Atu2653: Atu2653 - Uroporphyrinogen III synthase HEM4, at 2,636,615 to 2,637,355 Atu2653 Atu2655: Atu2655 - hypothetical protein, at 2,637,429 to 2,638,874 Atu2655 Position (kb) 2635 2636 2637Strain fitness (log2 ratio) -1 0 1at 2635.613 kb on - strandat 2635.647 kb on - strandat 2636.607 kb on - strandat 2636.607 kb on - strandat 2637.329 kb on + strandat 2637.396 kb on + strandat 2637.396 kb on + strandat 2637.396 kb on + strandat 2637.396 kb on + strandat 2637.403 kb on - strandat 2637.469 kb on - strandat 2637.553 kb on - strandat 2637.577 kb on + strand, within Atu2655at 2637.580 kb on - strand, within Atu2655at 2637.592 kb on - strand, within Atu2655

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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2,635,613 - +0.1
2,635,647 - -0.4
2,636,607 - -0.6
2,636,607 - -0.6
2,637,329 + +0.0
2,637,396 + +0.1
2,637,396 + -0.2
2,637,396 + -0.6
2,637,396 + -0.3
2,637,403 - -0.1
2,637,469 - -1.1
2,637,553 - -0.4
2,637,577 + Atu2655 0.10 +0.1
2,637,580 - Atu2655 0.10 -1.3
2,637,592 - Atu2655 0.11 -0.0

Or see this region's nucleotide sequence