Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0637 and Atu0638 are separated by 20 nucleotides Atu0638 and Atu0639 are separated by 130 nucleotides Atu0639 and Atu0640 are separated by 97 nucleotides Atu0640 and Atu0641 are separated by 193 nucleotides
Atu0637: Atu0637 - proteinase sohB, at 625,105 to 625,887
Atu0637
Atu0638: Atu0638 - hypothetical protein, at 625,908 to 626,102
Atu0638
Atu0639: Atu0639 - glycyl-tRNA synthetase, alpha subunit, at 626,233 to 627,165
Atu0639
Atu0640: Atu0640 - hypothetical protein, at 627,263 to 627,580
Atu0640
Atu0641: Atu0641 - hypothetical protein, at 627,774 to 628,325
Atu0641
Position (kb) 626
627
628 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 625.302 kb on - strand, within Atu0637 at 625.302 kb on - strand, within Atu0637 at 625.447 kb on + strand, within Atu0637 at 625.453 kb on - strand, within Atu0637 at 625.458 kb on + strand, within Atu0637 at 625.466 kb on - strand, within Atu0637 at 625.538 kb on - strand, within Atu0637 at 625.632 kb on + strand, within Atu0637 at 625.632 kb on + strand, within Atu0637 at 625.632 kb on + strand, within Atu0637 at 625.632 kb on + strand, within Atu0637 at 625.640 kb on - strand, within Atu0637 at 625.640 kb on - strand, within Atu0637 at 625.696 kb on + strand, within Atu0637 at 625.704 kb on - strand, within Atu0637 at 625.722 kb on + strand, within Atu0637 at 625.727 kb on + strand, within Atu0637 at 625.792 kb on - strand, within Atu0637 at 625.812 kb on + strand at 625.837 kb on - strand at 625.888 kb on - strand at 625.924 kb on - strand at 626.007 kb on - strand, within Atu0638 at 626.007 kb on - strand, within Atu0638 at 626.105 kb on - strand at 626.105 kb on - strand at 626.105 kb on - strand at 626.105 kb on - strand at 627.287 kb on + strand at 627.305 kb on + strand, within Atu0640 at 627.326 kb on - strand, within Atu0640 at 627.331 kb on - strand, within Atu0640 at 627.576 kb on + strand at 627.623 kb on - strand at 627.675 kb on - strand at 627.681 kb on - strand at 627.712 kb on + strand at 627.720 kb on - strand at 627.854 kb on + strand, within Atu0641
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 625,302 - Atu0637 0.25 -0.0 625,302 - Atu0637 0.25 -0.2 625,447 + Atu0637 0.44 +0.2 625,453 - Atu0637 0.44 -0.8 625,458 + Atu0637 0.45 +0.7 625,466 - Atu0637 0.46 +0.0 625,538 - Atu0637 0.55 -0.3 625,632 + Atu0637 0.67 -0.0 625,632 + Atu0637 0.67 -1.1 625,632 + Atu0637 0.67 +0.1 625,632 + Atu0637 0.67 -0.0 625,640 - Atu0637 0.68 -0.3 625,640 - Atu0637 0.68 -1.1 625,696 + Atu0637 0.75 +1.2 625,704 - Atu0637 0.77 -1.4 625,722 + Atu0637 0.79 -0.7 625,727 + Atu0637 0.79 -0.4 625,792 - Atu0637 0.88 +0.7 625,812 + -0.5 625,837 - +0.5 625,888 - +0.4 625,924 - +0.1 626,007 - Atu0638 0.51 -1.3 626,007 - Atu0638 0.51 -1.0 626,105 - +0.0 626,105 - +0.3 626,105 - -0.8 626,105 - +0.1 627,287 + +0.3 627,305 + Atu0640 0.13 -0.9 627,326 - Atu0640 0.20 -0.1 627,331 - Atu0640 0.21 +1.3 627,576 + -0.3 627,623 - +0.3 627,675 - +0.0 627,681 - -0.1 627,712 + +1.0 627,720 - +0.0 627,854 + Atu0641 0.14 -3.5
Or see this region's nucleotide sequence