Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03095 and PS417_03100 overlap by 4 nucleotides PS417_03100 and PS417_03105 overlap by 4 nucleotides
PS417_03095: PS417_03095 - ATPase, at 710,106 to 711,377
_03095
PS417_03100: PS417_03100 - pilus assembly protein, at 711,374 to 712,567
_03100
PS417_03105: PS417_03105 - secretin, at 712,564 to 713,781
_03105
Position (kb) 711
712
713 Strain fitness (log2 ratio) -1
0
1
2 at 710.460 kb on + strand, within PS417_03095 at 710.460 kb on + strand, within PS417_03095 at 710.461 kb on - strand, within PS417_03095 at 710.598 kb on + strand, within PS417_03095 at 710.598 kb on + strand, within PS417_03095 at 710.598 kb on + strand, within PS417_03095 at 710.598 kb on + strand, within PS417_03095 at 710.599 kb on - strand, within PS417_03095 at 711.185 kb on + strand, within PS417_03095 at 711.185 kb on + strand, within PS417_03095 at 711.185 kb on + strand, within PS417_03095 at 711.186 kb on - strand, within PS417_03095 at 711.186 kb on - strand, within PS417_03095 at 711.197 kb on - strand, within PS417_03095 at 711.289 kb on + strand at 711.289 kb on + strand at 711.290 kb on - strand at 712.403 kb on + strand, within PS417_03100 at 712.404 kb on - strand, within PS417_03100 at 712.582 kb on - strand at 712.637 kb on + strand at 712.637 kb on + strand at 712.944 kb on - strand, within PS417_03105 at 712.944 kb on - strand, within PS417_03105 at 713.039 kb on + strand, within PS417_03105 at 713.039 kb on + strand, within PS417_03105 at 713.040 kb on - strand, within PS417_03105
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 710,460 + PS417_03095 0.28 +0.8 710,460 + PS417_03095 0.28 -0.5 710,461 - PS417_03095 0.28 +0.4 710,598 + PS417_03095 0.39 -0.7 710,598 + PS417_03095 0.39 -0.1 710,598 + PS417_03095 0.39 +0.3 710,598 + PS417_03095 0.39 +2.2 710,599 - PS417_03095 0.39 +0.6 711,185 + PS417_03095 0.85 +0.7 711,185 + PS417_03095 0.85 -0.0 711,185 + PS417_03095 0.85 +0.2 711,186 - PS417_03095 0.85 -0.1 711,186 - PS417_03095 0.85 +0.4 711,197 - PS417_03095 0.86 -1.7 711,289 + -0.0 711,289 + +0.2 711,290 - -0.1 712,403 + PS417_03100 0.86 -1.4 712,404 - PS417_03100 0.86 -0.6 712,582 - -0.9 712,637 + -0.2 712,637 + -1.6 712,944 - PS417_03105 0.31 +0.2 712,944 - PS417_03105 0.31 -0.1 713,039 + PS417_03105 0.39 -0.2 713,039 + PS417_03105 0.39 +0.3 713,040 - PS417_03105 0.39 +0.2
Or see this region's nucleotide sequence