Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3345 and Atu3346 overlap by 1 nucleotides Atu3346 and Atu3347 are separated by 143 nucleotides Atu3347 and Atu3348 are separated by 23 nucleotides Atu3348 and Atu3349 are separated by 56 nucleotides
Atu3345: Atu3345 - 6-pyruvoyl tetrahydrobiopterin synthase, at 379,335 to 379,691
Atu3345
Atu3346: Atu3346 - succinoglycan biosynthesis regulator, at 379,691 to 380,401
Atu3346
Atu3347: Atu3347 - hypothetical protein, at 380,545 to 381,678
Atu3347
Atu3348: Atu3348 - hypothetical protein, at 381,702 to 382,466
Atu3348
Atu3349: Atu3349 - ABC transporter permease, at 382,523 to 383,611
Atu3349
Position (kb) 380
381
382 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 379.595 kb on + strand, within Atu3345 at 379.639 kb on + strand, within Atu3345 at 379.710 kb on + strand at 379.710 kb on + strand at 379.710 kb on + strand at 379.718 kb on - strand at 379.718 kb on - strand at 379.718 kb on - strand at 379.723 kb on - strand at 379.923 kb on - strand, within Atu3346 at 379.923 kb on - strand, within Atu3346 at 379.936 kb on + strand, within Atu3346 at 379.944 kb on - strand, within Atu3346 at 379.960 kb on - strand, within Atu3346 at 379.967 kb on + strand, within Atu3346 at 379.992 kb on + strand, within Atu3346 at 380.080 kb on + strand, within Atu3346 at 380.201 kb on - strand, within Atu3346 at 380.326 kb on - strand, within Atu3346 at 380.379 kb on + strand at 380.441 kb on + strand at 380.535 kb on + strand at 380.638 kb on + strand at 380.666 kb on - strand, within Atu3347 at 380.684 kb on + strand, within Atu3347 at 380.697 kb on - strand, within Atu3347 at 380.752 kb on - strand, within Atu3347 at 380.767 kb on + strand, within Atu3347 at 380.893 kb on + strand, within Atu3347 at 380.940 kb on + strand, within Atu3347 at 380.940 kb on + strand, within Atu3347 at 380.948 kb on - strand, within Atu3347 at 381.196 kb on - strand, within Atu3347 at 381.242 kb on - strand, within Atu3347 at 381.254 kb on + strand, within Atu3347 at 381.262 kb on - strand, within Atu3347 at 381.272 kb on - strand, within Atu3347 at 381.439 kb on - strand, within Atu3347 at 381.469 kb on + strand, within Atu3347 at 381.583 kb on - strand at 381.604 kb on - strand at 381.604 kb on - strand at 381.666 kb on + strand at 381.765 kb on - strand at 381.848 kb on + strand, within Atu3348 at 381.910 kb on + strand, within Atu3348 at 382.041 kb on - strand, within Atu3348 at 382.086 kb on + strand, within Atu3348 at 382.148 kb on + strand, within Atu3348 at 382.151 kb on - strand, within Atu3348 at 382.191 kb on - strand, within Atu3348 at 382.287 kb on + strand, within Atu3348 at 382.292 kb on + strand, within Atu3348 at 382.347 kb on + strand, within Atu3348 at 382.366 kb on + strand, within Atu3348 at 382.374 kb on - strand, within Atu3348 at 382.438 kb on + strand at 382.438 kb on + strand at 382.529 kb on - strand at 382.565 kb on + strand at 382.568 kb on - strand at 382.570 kb on + strand at 382.588 kb on + strand at 382.596 kb on - strand at 382.596 kb on - strand at 382.596 kb on - strand at 382.640 kb on + strand, within Atu3349 at 382.659 kb on - strand, within Atu3349
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 379,595 + Atu3345 0.73 +0.5 379,639 + Atu3345 0.85 -0.7 379,710 + +0.8 379,710 + -0.0 379,710 + -0.5 379,718 - +0.1 379,718 - +0.0 379,718 - +0.5 379,723 - -0.6 379,923 - Atu3346 0.33 -0.5 379,923 - Atu3346 0.33 -0.2 379,936 + Atu3346 0.34 +0.4 379,944 - Atu3346 0.36 -0.9 379,960 - Atu3346 0.38 +0.2 379,967 + Atu3346 0.39 -0.7 379,992 + Atu3346 0.42 -1.2 380,080 + Atu3346 0.55 +0.0 380,201 - Atu3346 0.72 -0.1 380,326 - Atu3346 0.89 -0.4 380,379 + -0.6 380,441 + -0.2 380,535 + +0.2 380,638 + -4.3 380,666 - Atu3347 0.11 -1.3 380,684 + Atu3347 0.12 -2.0 380,697 - Atu3347 0.13 -3.3 380,752 - Atu3347 0.18 -5.2 380,767 + Atu3347 0.20 -5.8 380,893 + Atu3347 0.31 -3.1 380,940 + Atu3347 0.35 -3.0 380,940 + Atu3347 0.35 -6.5 380,948 - Atu3347 0.36 -3.5 381,196 - Atu3347 0.57 -4.6 381,242 - Atu3347 0.61 -2.0 381,254 + Atu3347 0.63 -4.4 381,262 - Atu3347 0.63 -4.0 381,272 - Atu3347 0.64 -3.9 381,439 - Atu3347 0.79 -6.5 381,469 + Atu3347 0.81 -4.5 381,583 - -4.9 381,604 - -4.2 381,604 - -3.9 381,666 + -4.7 381,765 - -2.4 381,848 + Atu3348 0.19 -3.0 381,910 + Atu3348 0.27 -4.3 382,041 - Atu3348 0.44 -3.6 382,086 + Atu3348 0.50 -3.9 382,148 + Atu3348 0.58 -3.3 382,151 - Atu3348 0.59 -5.4 382,191 - Atu3348 0.64 -3.7 382,287 + Atu3348 0.76 -3.2 382,292 + Atu3348 0.77 -4.9 382,347 + Atu3348 0.84 -2.0 382,366 + Atu3348 0.87 -3.2 382,374 - Atu3348 0.88 -2.4 382,438 + -3.6 382,438 + -5.8 382,529 - -4.1 382,565 + -1.9 382,568 - -0.8 382,570 + -2.7 382,588 + -3.9 382,596 - -2.8 382,596 - -1.8 382,596 - -3.6 382,640 + Atu3349 0.11 -3.7 382,659 - Atu3349 0.12 -2.4
Or see this region's nucleotide sequence