Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3146 and Atu3147 are separated by 234 nucleotides Atu3147 and Atu3148 are separated by 35 nucleotides
Atu3146: Atu3146 - proline dipeptidase, at 152,887 to 154,119
Atu3146
Atu3147: Atu3147 - oxidoreductase, at 154,354 to 156,357
Atu3147
Atu3148: Atu3148 - sugar ABC transporter ATPase, at 156,393 to 157,478
Atu3148
Position (kb) 154
155
156
157 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 153.360 kb on - strand, within Atu3146 at 153.629 kb on - strand, within Atu3146 at 153.765 kb on - strand, within Atu3146 at 153.824 kb on + strand, within Atu3146 at 154.043 kb on + strand at 154.051 kb on - strand at 154.109 kb on + strand at 154.125 kb on - strand at 154.152 kb on - strand at 154.170 kb on - strand at 154.193 kb on - strand at 154.233 kb on + strand at 154.310 kb on - strand at 154.367 kb on + strand at 154.375 kb on - strand at 154.377 kb on + strand at 154.414 kb on + strand at 154.425 kb on + strand at 154.483 kb on + strand at 154.555 kb on + strand, within Atu3147 at 154.563 kb on - strand, within Atu3147 at 154.772 kb on + strand, within Atu3147 at 155.000 kb on - strand, within Atu3147 at 155.022 kb on - strand, within Atu3147 at 155.116 kb on + strand, within Atu3147 at 155.234 kb on + strand, within Atu3147 at 155.245 kb on + strand, within Atu3147 at 155.286 kb on - strand, within Atu3147 at 155.286 kb on - strand, within Atu3147 at 155.345 kb on - strand, within Atu3147 at 155.471 kb on + strand, within Atu3147 at 155.594 kb on - strand, within Atu3147 at 155.611 kb on + strand, within Atu3147 at 155.618 kb on + strand, within Atu3147 at 155.687 kb on + strand, within Atu3147 at 155.705 kb on + strand, within Atu3147 at 155.785 kb on + strand, within Atu3147 at 155.785 kb on + strand, within Atu3147 at 155.794 kb on + strand, within Atu3147 at 155.880 kb on - strand, within Atu3147 at 155.933 kb on - strand, within Atu3147 at 156.042 kb on + strand, within Atu3147 at 156.179 kb on + strand at 156.187 kb on - strand at 156.222 kb on + strand at 156.255 kb on + strand at 156.255 kb on + strand at 156.263 kb on - strand at 156.263 kb on - strand at 156.279 kb on + strand at 156.279 kb on + strand at 156.287 kb on - strand at 156.301 kb on - strand at 156.451 kb on + strand at 156.536 kb on - strand, within Atu3148 at 156.536 kb on - strand, within Atu3148 at 156.546 kb on - strand, within Atu3148 at 156.625 kb on - strand, within Atu3148 at 156.665 kb on + strand, within Atu3148 at 156.678 kb on + strand, within Atu3148 at 156.895 kb on + strand, within Atu3148 at 156.901 kb on - strand, within Atu3148 at 156.901 kb on - strand, within Atu3148 at 156.925 kb on + strand, within Atu3148 at 157.100 kb on - strand, within Atu3148 at 157.113 kb on - strand, within Atu3148 at 157.156 kb on + strand, within Atu3148 at 157.164 kb on - strand, within Atu3148 at 157.164 kb on - strand, within Atu3148
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 153,360 - Atu3146 0.38 -0.2 153,629 - Atu3146 0.60 +0.2 153,765 - Atu3146 0.71 -0.0 153,824 + Atu3146 0.76 -0.6 154,043 + -0.9 154,051 - -0.7 154,109 + +0.1 154,125 - -0.1 154,152 - -0.1 154,170 - +0.1 154,193 - -0.4 154,233 + -1.4 154,310 - +0.3 154,367 + -5.2 154,375 - -4.5 154,377 + -2.0 154,414 + -3.6 154,425 + -6.2 154,483 + -1.6 154,555 + Atu3147 0.10 -2.0 154,563 - Atu3147 0.10 -2.7 154,772 + Atu3147 0.21 -3.6 155,000 - Atu3147 0.32 -3.3 155,022 - Atu3147 0.33 -1.9 155,116 + Atu3147 0.38 -3.1 155,234 + Atu3147 0.44 -4.9 155,245 + Atu3147 0.44 -3.5 155,286 - Atu3147 0.47 -4.9 155,286 - Atu3147 0.47 -5.2 155,345 - Atu3147 0.49 -3.4 155,471 + Atu3147 0.56 -4.8 155,594 - Atu3147 0.62 -4.7 155,611 + Atu3147 0.63 -4.0 155,618 + Atu3147 0.63 -1.5 155,687 + Atu3147 0.67 -5.3 155,705 + Atu3147 0.67 -4.5 155,785 + Atu3147 0.71 -5.5 155,785 + Atu3147 0.71 -3.4 155,794 + Atu3147 0.72 -2.4 155,880 - Atu3147 0.76 -4.3 155,933 - Atu3147 0.79 -2.3 156,042 + Atu3147 0.84 -4.6 156,179 + -6.0 156,187 - -2.1 156,222 + -3.9 156,255 + -5.2 156,255 + -4.9 156,263 - -4.8 156,263 - -4.7 156,279 + -4.6 156,279 + -4.1 156,287 - -5.2 156,301 - -3.5 156,451 + -2.5 156,536 - Atu3148 0.13 -3.8 156,536 - Atu3148 0.13 -2.8 156,546 - Atu3148 0.14 -1.9 156,625 - Atu3148 0.21 -4.9 156,665 + Atu3148 0.25 -1.1 156,678 + Atu3148 0.26 -3.7 156,895 + Atu3148 0.46 -1.6 156,901 - Atu3148 0.47 -2.4 156,901 - Atu3148 0.47 -3.8 156,925 + Atu3148 0.49 -3.6 157,100 - Atu3148 0.65 -2.9 157,113 - Atu3148 0.66 -3.7 157,156 + Atu3148 0.70 -5.4 157,164 - Atu3148 0.71 -3.5 157,164 - Atu3148 0.71 -4.9
Or see this region's nucleotide sequence