Strain Fitness in Agrobacterium fabrum C58 around Atu0021

Experiment: Maltitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0020 and Atu0021 are separated by 122 nucleotidesAtu0021 and Atu0022 are separated by 47 nucleotidesAtu0022 and Atu0023 are separated by 77 nucleotides Atu0020: Atu0020 - acetyl-coenzyme A carboxyl transferase, beta subunit, at 17,231 to 18,127 Atu0020 Atu0021: Atu0021 - folylpolyglutamate synthase, at 18,250 to 19,593 Atu0021 Atu0022: Atu0022 - thioredoxin, at 19,641 to 19,961 Atu0022 Atu0023: Atu0023 - ATP-dependant DNA helicase, at 20,039 to 23,596 Atu0023 Position (kb) 18 19 20Strain fitness (log2 ratio) -1 0 1at 18.168 kb on - strandat 18.174 kb on + strandat 18.180 kb on - strandat 18.182 kb on - strandat 18.229 kb on + strandat 18.242 kb on + strandat 20.048 kb on - strandat 20.054 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Maltitol (C)
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18,168 - +0.1
18,174 + -0.1
18,180 - +0.5
18,182 - -0.1
18,229 + +0.4
18,242 + +0.1
20,048 - -0.4
20,054 - -0.5

Or see this region's nucleotide sequence