Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3532

Experiment: KB with Veratrine 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3531 and Psyr_3532 are separated by 287 nucleotidesPsyr_3532 and Psyr_3533 are separated by 1 nucleotidesPsyr_3533 and Psyr_3534 are separated by 162 nucleotides Psyr_3531: Psyr_3531 - Permease for cytosine/purines, uracil, thiamine, allantoin, at 4,207,489 to 4,208,940 _3531 Psyr_3532: Psyr_3532 - PAS, at 4,209,228 to 4,211,303 _3532 Psyr_3533: Psyr_3533 - conserved hypothetical protein, at 4,211,305 to 4,211,628 _3533 Psyr_3534: Psyr_3534 - Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer, at 4,211,791 to 4,213,680 _3534 Position (kb) 4209 4210 4211 4212Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4208.560 kb on - strand, within Psyr_3531at 4208.660 kb on - strand, within Psyr_3531at 4208.660 kb on - strand, within Psyr_3531at 4208.660 kb on - strand, within Psyr_3531at 4208.662 kb on + strand, within Psyr_3531at 4208.663 kb on - strand, within Psyr_3531at 4208.731 kb on + strand, within Psyr_3531at 4208.731 kb on + strand, within Psyr_3531at 4208.732 kb on - strand, within Psyr_3531at 4208.875 kb on + strandat 4208.875 kb on + strandat 4209.141 kb on + strandat 4209.141 kb on + strandat 4209.142 kb on - strandat 4209.564 kb on - strand, within Psyr_3532at 4209.567 kb on + strand, within Psyr_3532at 4209.568 kb on - strand, within Psyr_3532at 4209.637 kb on + strand, within Psyr_3532at 4209.637 kb on + strand, within Psyr_3532at 4209.637 kb on + strand, within Psyr_3532at 4209.637 kb on + strand, within Psyr_3532at 4209.638 kb on - strand, within Psyr_3532at 4209.638 kb on - strand, within Psyr_3532at 4209.648 kb on - strand, within Psyr_3532at 4209.649 kb on + strand, within Psyr_3532at 4209.649 kb on + strand, within Psyr_3532at 4209.650 kb on - strand, within Psyr_3532at 4209.650 kb on - strand, within Psyr_3532at 4209.650 kb on - strand, within Psyr_3532at 4209.650 kb on - strand, within Psyr_3532at 4209.650 kb on - strand, within Psyr_3532at 4209.650 kb on - strand, within Psyr_3532at 4209.650 kb on - strand, within Psyr_3532at 4209.650 kb on - strand, within Psyr_3532at 4209.735 kb on + strand, within Psyr_3532at 4209.736 kb on - strand, within Psyr_3532at 4210.442 kb on - strand, within Psyr_3532at 4210.566 kb on - strand, within Psyr_3532at 4210.761 kb on + strand, within Psyr_3532at 4210.762 kb on - strand, within Psyr_3532at 4210.762 kb on - strand, within Psyr_3532at 4210.762 kb on - strand, within Psyr_3532at 4210.828 kb on + strand, within Psyr_3532at 4210.933 kb on + strand, within Psyr_3532at 4210.989 kb on + strand, within Psyr_3532at 4210.989 kb on + strand, within Psyr_3532at 4211.074 kb on + strand, within Psyr_3532at 4211.074 kb on + strand, within Psyr_3532at 4211.074 kb on + strand, within Psyr_3532at 4211.074 kb on + strand, within Psyr_3532at 4211.074 kb on + strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.588 kb on - strand, within Psyr_3533at 4211.683 kb on + strandat 4211.684 kb on - strandat 4211.685 kb on + strandat 4211.746 kb on - strandat 4211.746 kb on - strandat 4211.746 kb on - strandat 4211.746 kb on - strandat 4211.749 kb on + strandat 4211.749 kb on + strandat 4211.749 kb on + strandat 4211.749 kb on + strandat 4211.749 kb on + strandat 4211.750 kb on - strandat 4211.750 kb on - strandat 4211.750 kb on - strandat 4211.766 kb on + strandat 4211.775 kb on - strandat 4211.875 kb on + strandat 4211.875 kb on + strandat 4211.875 kb on + strandat 4211.875 kb on + strandat 4211.876 kb on - strandat 4211.876 kb on - strandat 4211.876 kb on - strandat 4211.884 kb on + strandat 4211.884 kb on + strandat 4211.884 kb on + strandat 4211.884 kb on + strandat 4211.884 kb on + strandat 4211.885 kb on - strandat 4211.928 kb on + strandat 4211.965 kb on - strandat 4212.091 kb on + strand, within Psyr_3534at 4212.092 kb on - strand, within Psyr_3534at 4212.175 kb on + strand, within Psyr_3534at 4212.176 kb on - strand, within Psyr_3534at 4212.176 kb on - strand, within Psyr_3534at 4212.176 kb on - strand, within Psyr_3534at 4212.221 kb on - strand, within Psyr_3534at 4212.297 kb on - strand, within Psyr_3534at 4212.297 kb on - strand, within Psyr_3534at 4212.297 kb on - strand, within Psyr_3534at 4212.297 kb on - strand, within Psyr_3534at 4212.297 kb on - strand, within Psyr_3534

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Veratrine 10 mM
remove
4,208,560 - Psyr_3531 0.74 -1.5
4,208,660 - Psyr_3531 0.81 +0.1
4,208,660 - Psyr_3531 0.81 -0.3
4,208,660 - Psyr_3531 0.81 +0.7
4,208,662 + Psyr_3531 0.81 -0.0
4,208,663 - Psyr_3531 0.81 +0.4
4,208,731 + Psyr_3531 0.86 -1.0
4,208,731 + Psyr_3531 0.86 +1.3
4,208,732 - Psyr_3531 0.86 -0.0
4,208,875 + -0.1
4,208,875 + -0.9
4,209,141 + +0.0
4,209,141 + +1.1
4,209,142 - -0.3
4,209,564 - Psyr_3532 0.16 +1.4
4,209,567 + Psyr_3532 0.16 +0.1
4,209,568 - Psyr_3532 0.16 +0.6
4,209,637 + Psyr_3532 0.20 -0.7
4,209,637 + Psyr_3532 0.20 +1.8
4,209,637 + Psyr_3532 0.20 -0.3
4,209,637 + Psyr_3532 0.20 -1.1
4,209,638 - Psyr_3532 0.20 +1.1
4,209,638 - Psyr_3532 0.20 +0.8
4,209,648 - Psyr_3532 0.20 -0.1
4,209,649 + Psyr_3532 0.20 +0.6
4,209,649 + Psyr_3532 0.20 +0.3
4,209,650 - Psyr_3532 0.20 -1.9
4,209,650 - Psyr_3532 0.20 +3.1
4,209,650 - Psyr_3532 0.20 +0.8
4,209,650 - Psyr_3532 0.20 +0.8
4,209,650 - Psyr_3532 0.20 +1.6
4,209,650 - Psyr_3532 0.20 +1.1
4,209,650 - Psyr_3532 0.20 +0.1
4,209,650 - Psyr_3532 0.20 +4.0
4,209,735 + Psyr_3532 0.24 -1.1
4,209,736 - Psyr_3532 0.24 -0.0
4,210,442 - Psyr_3532 0.58 -0.2
4,210,566 - Psyr_3532 0.64 +0.5
4,210,761 + Psyr_3532 0.74 +1.5
4,210,762 - Psyr_3532 0.74 -0.0
4,210,762 - Psyr_3532 0.74 -0.8
4,210,762 - Psyr_3532 0.74 +0.5
4,210,828 + Psyr_3532 0.77 -0.4
4,210,933 + Psyr_3532 0.82 +2.1
4,210,989 + Psyr_3532 0.85 -0.3
4,210,989 + Psyr_3532 0.85 +1.0
4,211,074 + Psyr_3532 0.89 +0.4
4,211,074 + Psyr_3532 0.89 -1.4
4,211,074 + Psyr_3532 0.89 -0.3
4,211,074 + Psyr_3532 0.89 -0.1
4,211,074 + Psyr_3532 0.89 +3.9
4,211,075 - Psyr_3532 0.89 +0.7
4,211,075 - Psyr_3532 0.89 -3.3
4,211,075 - Psyr_3532 0.89 +1.1
4,211,075 - Psyr_3532 0.89 +0.1
4,211,075 - Psyr_3532 0.89 +0.5
4,211,075 - Psyr_3532 0.89 -1.2
4,211,075 - Psyr_3532 0.89 -1.4
4,211,588 - Psyr_3533 0.87 +2.1
4,211,683 + -1.7
4,211,684 - +0.1
4,211,685 + +1.6
4,211,746 - -0.3
4,211,746 - +1.1
4,211,746 - -0.7
4,211,746 - -0.2
4,211,749 + -0.2
4,211,749 + +0.5
4,211,749 + -1.3
4,211,749 + +0.0
4,211,749 + +0.2
4,211,750 - +0.4
4,211,750 - -0.2
4,211,750 - -0.7
4,211,766 + +0.9
4,211,775 - -1.2
4,211,875 + -1.2
4,211,875 + -0.4
4,211,875 + +4.3
4,211,875 + -1.1
4,211,876 - +1.1
4,211,876 - +0.2
4,211,876 - +0.5
4,211,884 + +1.4
4,211,884 + -1.2
4,211,884 + -0.4
4,211,884 + -0.1
4,211,884 + -1.7
4,211,885 - -0.6
4,211,928 + +0.9
4,211,965 - +1.0
4,212,091 + Psyr_3534 0.16 -0.9
4,212,092 - Psyr_3534 0.16 +1.1
4,212,175 + Psyr_3534 0.20 -0.3
4,212,176 - Psyr_3534 0.20 +0.5
4,212,176 - Psyr_3534 0.20 -1.2
4,212,176 - Psyr_3534 0.20 -1.0
4,212,221 - Psyr_3534 0.23 -0.5
4,212,297 - Psyr_3534 0.27 -0.9
4,212,297 - Psyr_3534 0.27 -1.6
4,212,297 - Psyr_3534 0.27 +0.7
4,212,297 - Psyr_3534 0.27 -0.2
4,212,297 - Psyr_3534 0.27 -1.4

Or see this region's nucleotide sequence