Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2671

Experiment: KB with Veratrine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2669 and Psyr_2670 are separated by 5 nucleotidesPsyr_2670 and Psyr_2671 are separated by 41 nucleotidesPsyr_2671 and Psyr_2672 are separated by 83 nucleotides Psyr_2669: Psyr_2669 - Aminoglycoside phosphotransferase, at 3,240,608 to 3,241,411 _2669 Psyr_2670: Psyr_2670 - Aminoglycoside/hydroxyurea antibiotic resistance kinase, at 3,241,417 to 3,242,247 _2670 Psyr_2671: Psyr_2671 - transcriptional regulator, LysR family, at 3,242,289 to 3,243,230 _2671 Psyr_2672: Psyr_2672 - Citrate transporter, at 3,243,314 to 3,244,606 _2672 Position (kb) 3242 3243 3244Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3241.329 kb on + strand, within Psyr_2669at 3241.338 kb on + strandat 3241.338 kb on + strandat 3241.339 kb on - strandat 3241.339 kb on - strandat 3241.339 kb on - strandat 3241.379 kb on + strandat 3241.380 kb on - strandat 3241.545 kb on + strand, within Psyr_2670at 3241.546 kb on - strand, within Psyr_2670at 3241.547 kb on + strand, within Psyr_2670at 3241.547 kb on + strand, within Psyr_2670at 3241.547 kb on + strand, within Psyr_2670at 3241.547 kb on + strand, within Psyr_2670at 3241.548 kb on - strand, within Psyr_2670at 3241.548 kb on - strand, within Psyr_2670at 3241.582 kb on + strand, within Psyr_2670at 3241.590 kb on - strand, within Psyr_2670at 3241.655 kb on - strand, within Psyr_2670at 3241.702 kb on + strand, within Psyr_2670at 3241.745 kb on - strand, within Psyr_2670at 3241.855 kb on + strand, within Psyr_2670at 3241.856 kb on - strand, within Psyr_2670at 3241.856 kb on - strand, within Psyr_2670at 3241.856 kb on - strand, within Psyr_2670at 3241.873 kb on - strand, within Psyr_2670at 3241.874 kb on + strand, within Psyr_2670at 3241.916 kb on + strand, within Psyr_2670at 3241.916 kb on + strand, within Psyr_2670at 3241.917 kb on - strand, within Psyr_2670at 3241.973 kb on + strand, within Psyr_2670at 3241.973 kb on + strand, within Psyr_2670at 3241.973 kb on + strand, within Psyr_2670at 3241.973 kb on + strand, within Psyr_2670at 3241.974 kb on - strand, within Psyr_2670at 3241.974 kb on - strand, within Psyr_2670at 3241.974 kb on - strand, within Psyr_2670at 3241.974 kb on - strand, within Psyr_2670at 3241.974 kb on - strand, within Psyr_2670at 3242.019 kb on + strand, within Psyr_2670at 3242.019 kb on + strand, within Psyr_2670at 3242.019 kb on + strand, within Psyr_2670at 3242.019 kb on + strand, within Psyr_2670at 3242.020 kb on - strand, within Psyr_2670at 3242.027 kb on - strand, within Psyr_2670at 3242.140 kb on + strand, within Psyr_2670at 3242.140 kb on + strand, within Psyr_2670at 3242.146 kb on + strand, within Psyr_2670at 3242.147 kb on - strand, within Psyr_2670at 3242.201 kb on + strandat 3242.201 kb on + strandat 3242.202 kb on - strandat 3242.202 kb on - strandat 3242.202 kb on - strandat 3242.243 kb on - strandat 3242.243 kb on - strandat 3242.243 kb on - strandat 3242.243 kb on - strandat 3242.245 kb on + strandat 3242.245 kb on + strandat 3242.245 kb on + strandat 3242.245 kb on + strandat 3242.245 kb on + strandat 3242.245 kb on + strandat 3242.245 kb on + strandat 3242.245 kb on + strandat 3242.245 kb on + strandat 3242.245 kb on + strandat 3242.245 kb on + strandat 3242.245 kb on + strandat 3242.245 kb on + strandat 3242.246 kb on - strandat 3242.246 kb on - strandat 3242.246 kb on - strandat 3242.246 kb on - strandat 3242.246 kb on - strandat 3242.246 kb on - strandat 3242.246 kb on - strandat 3242.246 kb on - strandat 3242.246 kb on - strandat 3242.246 kb on - strandat 3242.246 kb on - strandat 3242.249 kb on + strandat 3242.375 kb on + strandat 3242.375 kb on + strandat 3242.376 kb on - strandat 3242.502 kb on - strand, within Psyr_2671at 3242.502 kb on - strand, within Psyr_2671at 3242.509 kb on + strand, within Psyr_2671at 3242.509 kb on + strand, within Psyr_2671at 3242.509 kb on + strand, within Psyr_2671at 3242.509 kb on + strand, within Psyr_2671at 3242.509 kb on + strand, within Psyr_2671at 3242.509 kb on + strand, within Psyr_2671at 3242.509 kb on + strand, within Psyr_2671at 3242.509 kb on + strand, within Psyr_2671at 3242.509 kb on + strand, within Psyr_2671at 3242.509 kb on + strand, within Psyr_2671at 3242.509 kb on + strand, within Psyr_2671at 3242.510 kb on - strand, within Psyr_2671at 3242.510 kb on - strand, within Psyr_2671at 3242.510 kb on - strand, within Psyr_2671at 3242.510 kb on - strand, within Psyr_2671at 3242.510 kb on - strand, within Psyr_2671at 3242.510 kb on - strand, within Psyr_2671at 3242.510 kb on - strand, within Psyr_2671at 3242.510 kb on - strand, within Psyr_2671at 3242.619 kb on + strand, within Psyr_2671at 3242.619 kb on + strand, within Psyr_2671at 3242.620 kb on - strand, within Psyr_2671at 3242.736 kb on + strand, within Psyr_2671at 3242.855 kb on + strand, within Psyr_2671at 3242.855 kb on + strand, within Psyr_2671at 3242.855 kb on + strand, within Psyr_2671at 3242.856 kb on - strand, within Psyr_2671at 3242.856 kb on - strand, within Psyr_2671at 3242.856 kb on - strand, within Psyr_2671at 3242.862 kb on + strand, within Psyr_2671at 3242.939 kb on + strand, within Psyr_2671at 3243.102 kb on + strand, within Psyr_2671at 3243.103 kb on - strand, within Psyr_2671at 3243.211 kb on + strandat 3243.212 kb on - strandat 3243.230 kb on + strandat 3243.231 kb on - strandat 3243.245 kb on + strandat 3243.264 kb on + strandat 3243.264 kb on + strandat 3243.265 kb on - strandat 3243.265 kb on - strandat 3243.265 kb on - strandat 3243.265 kb on - strandat 3243.505 kb on - strand, within Psyr_2672at 3243.698 kb on + strand, within Psyr_2672at 3243.699 kb on - strand, within Psyr_2672at 3243.945 kb on + strand, within Psyr_2672at 3243.945 kb on + strand, within Psyr_2672at 3243.945 kb on + strand, within Psyr_2672at 3243.946 kb on - strand, within Psyr_2672at 3243.946 kb on - strand, within Psyr_2672at 3243.946 kb on - strand, within Psyr_2672at 3243.946 kb on - strand, within Psyr_2672at 3243.946 kb on - strand, within Psyr_2672at 3244.062 kb on + strand, within Psyr_2672at 3244.063 kb on - strand, within Psyr_2672at 3244.115 kb on + strand, within Psyr_2672at 3244.116 kb on - strand, within Psyr_2672

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Veratrine 10 mM
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3,241,329 + Psyr_2669 0.90 -1.1
3,241,338 + -0.1
3,241,338 + -1.9
3,241,339 - -0.8
3,241,339 - +0.4
3,241,339 - -0.2
3,241,379 + +0.7
3,241,380 - +3.8
3,241,545 + Psyr_2670 0.15 -1.5
3,241,546 - Psyr_2670 0.16 -0.0
3,241,547 + Psyr_2670 0.16 +0.4
3,241,547 + Psyr_2670 0.16 -1.7
3,241,547 + Psyr_2670 0.16 -1.7
3,241,547 + Psyr_2670 0.16 -0.1
3,241,548 - Psyr_2670 0.16 +0.1
3,241,548 - Psyr_2670 0.16 -2.3
3,241,582 + Psyr_2670 0.20 +0.1
3,241,590 - Psyr_2670 0.21 -0.9
3,241,655 - Psyr_2670 0.29 +0.2
3,241,702 + Psyr_2670 0.34 +2.0
3,241,745 - Psyr_2670 0.39 +1.0
3,241,855 + Psyr_2670 0.53 +2.2
3,241,856 - Psyr_2670 0.53 +0.3
3,241,856 - Psyr_2670 0.53 -0.7
3,241,856 - Psyr_2670 0.53 +0.4
3,241,873 - Psyr_2670 0.55 +0.3
3,241,874 + Psyr_2670 0.55 +0.5
3,241,916 + Psyr_2670 0.60 +0.7
3,241,916 + Psyr_2670 0.60 +3.4
3,241,917 - Psyr_2670 0.60 +0.2
3,241,973 + Psyr_2670 0.67 +0.9
3,241,973 + Psyr_2670 0.67 +1.2
3,241,973 + Psyr_2670 0.67 -0.3
3,241,973 + Psyr_2670 0.67 +0.4
3,241,974 - Psyr_2670 0.67 -1.0
3,241,974 - Psyr_2670 0.67 +0.4
3,241,974 - Psyr_2670 0.67 -0.9
3,241,974 - Psyr_2670 0.67 -1.9
3,241,974 - Psyr_2670 0.67 -0.8
3,242,019 + Psyr_2670 0.72 -0.3
3,242,019 + Psyr_2670 0.72 +1.7
3,242,019 + Psyr_2670 0.72 -1.7
3,242,019 + Psyr_2670 0.72 +0.5
3,242,020 - Psyr_2670 0.73 +1.9
3,242,027 - Psyr_2670 0.73 -2.1
3,242,140 + Psyr_2670 0.87 +0.7
3,242,140 + Psyr_2670 0.87 -2.2
3,242,146 + Psyr_2670 0.88 +0.4
3,242,147 - Psyr_2670 0.88 +1.5
3,242,201 + -1.2
3,242,201 + -1.8
3,242,202 - -2.3
3,242,202 - -1.1
3,242,202 - +0.7
3,242,243 - +0.2
3,242,243 - -2.0
3,242,243 - -2.3
3,242,243 - -1.1
3,242,245 + -1.3
3,242,245 + -0.1
3,242,245 + -1.3
3,242,245 + -2.3
3,242,245 + -0.2
3,242,245 + -3.1
3,242,245 + -3.1
3,242,245 + -0.5
3,242,245 + -2.1
3,242,245 + -2.3
3,242,245 + -0.9
3,242,245 + -0.9
3,242,245 + -1.1
3,242,246 - +3.0
3,242,246 - +3.2
3,242,246 - -0.5
3,242,246 - -0.5
3,242,246 - +0.5
3,242,246 - +0.4
3,242,246 - -0.4
3,242,246 - -2.0
3,242,246 - +0.8
3,242,246 - +0.3
3,242,246 - -2.3
3,242,249 + -1.9
3,242,375 + -2.4
3,242,375 + +0.1
3,242,376 - +0.6
3,242,502 - Psyr_2671 0.23 -1.8
3,242,502 - Psyr_2671 0.23 +0.6
3,242,509 + Psyr_2671 0.23 +2.9
3,242,509 + Psyr_2671 0.23 +2.0
3,242,509 + Psyr_2671 0.23 -1.6
3,242,509 + Psyr_2671 0.23 +0.6
3,242,509 + Psyr_2671 0.23 -1.3
3,242,509 + Psyr_2671 0.23 -1.2
3,242,509 + Psyr_2671 0.23 +0.4
3,242,509 + Psyr_2671 0.23 -1.7
3,242,509 + Psyr_2671 0.23 +0.1
3,242,509 + Psyr_2671 0.23 +0.4
3,242,509 + Psyr_2671 0.23 -2.4
3,242,510 - Psyr_2671 0.23 +2.4
3,242,510 - Psyr_2671 0.23 -2.4
3,242,510 - Psyr_2671 0.23 +4.0
3,242,510 - Psyr_2671 0.23 -2.1
3,242,510 - Psyr_2671 0.23 +1.0
3,242,510 - Psyr_2671 0.23 -0.8
3,242,510 - Psyr_2671 0.23 +1.4
3,242,510 - Psyr_2671 0.23 +0.2
3,242,619 + Psyr_2671 0.35 +0.1
3,242,619 + Psyr_2671 0.35 -1.1
3,242,620 - Psyr_2671 0.35 +0.3
3,242,736 + Psyr_2671 0.47 -0.0
3,242,855 + Psyr_2671 0.60 +1.4
3,242,855 + Psyr_2671 0.60 -1.0
3,242,855 + Psyr_2671 0.60 -1.3
3,242,856 - Psyr_2671 0.60 -0.2
3,242,856 - Psyr_2671 0.60 -1.2
3,242,856 - Psyr_2671 0.60 -0.9
3,242,862 + Psyr_2671 0.61 +0.3
3,242,939 + Psyr_2671 0.69 -2.0
3,243,102 + Psyr_2671 0.86 -0.9
3,243,103 - Psyr_2671 0.86 -1.3
3,243,211 + -2.3
3,243,212 - +0.2
3,243,230 + -0.9
3,243,231 - -0.1
3,243,245 + -0.1
3,243,264 + -2.3
3,243,264 + +0.6
3,243,265 - -0.6
3,243,265 - +4.4
3,243,265 - +1.4
3,243,265 - +1.8
3,243,505 - Psyr_2672 0.15 -0.6
3,243,698 + Psyr_2672 0.30 +0.9
3,243,699 - Psyr_2672 0.30 +1.4
3,243,945 + Psyr_2672 0.49 +1.2
3,243,945 + Psyr_2672 0.49 -0.1
3,243,945 + Psyr_2672 0.49 -0.2
3,243,946 - Psyr_2672 0.49 +3.4
3,243,946 - Psyr_2672 0.49 -0.0
3,243,946 - Psyr_2672 0.49 -0.1
3,243,946 - Psyr_2672 0.49 +0.4
3,243,946 - Psyr_2672 0.49 -2.5
3,244,062 + Psyr_2672 0.58 +2.4
3,244,063 - Psyr_2672 0.58 +1.8
3,244,115 + Psyr_2672 0.62 +0.3
3,244,116 - Psyr_2672 0.62 +0.2

Or see this region's nucleotide sequence