Experiment: KB with Veratrine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0797 and Psyr_0798 are separated by 2 nucleotides Psyr_0798 and Psyr_0799 are separated by 225 nucleotides Psyr_0799 and Psyr_0800 are separated by 174 nucleotides
Psyr_0797: Psyr_0797 - type II secretion system protein, at 902,289 to 903,506
_0797
Psyr_0798: Psyr_0798 - type II secretion system protein E:General secretory system II, protein E, N-terminal, at 903,509 to 905,203
_0798
Psyr_0799: Psyr_0799 - Fimbrial protein pilin, at 905,429 to 905,848
_0799
Psyr_0800: Psyr_0800 - Protein of unknown function DUF1523, at 906,023 to 906,568
_0800
Position (kb) 903
904
905
906 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 902.549 kb on + strand, within Psyr_0797 at 902.572 kb on - strand, within Psyr_0797 at 902.596 kb on - strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.599 kb on - strand, within Psyr_0797 at 902.599 kb on - strand, within Psyr_0797 at 902.599 kb on - strand, within Psyr_0797 at 902.599 kb on - strand, within Psyr_0797 at 902.599 kb on - strand, within Psyr_0797 at 902.599 kb on - strand, within Psyr_0797 at 902.599 kb on - strand, within Psyr_0797 at 902.599 kb on - strand, within Psyr_0797 at 902.779 kb on + strand, within Psyr_0797 at 902.780 kb on - strand, within Psyr_0797 at 902.780 kb on - strand, within Psyr_0797 at 902.845 kb on - strand, within Psyr_0797 at 902.845 kb on - strand, within Psyr_0797 at 902.955 kb on + strand, within Psyr_0797 at 903.039 kb on - strand, within Psyr_0797 at 903.040 kb on + strand, within Psyr_0797 at 903.040 kb on + strand, within Psyr_0797 at 903.040 kb on + strand, within Psyr_0797 at 903.040 kb on + strand, within Psyr_0797 at 903.040 kb on + strand, within Psyr_0797 at 903.040 kb on + strand, within Psyr_0797 at 903.041 kb on - strand, within Psyr_0797 at 903.041 kb on - strand, within Psyr_0797 at 903.041 kb on - strand, within Psyr_0797 at 903.041 kb on - strand, within Psyr_0797 at 903.041 kb on - strand, within Psyr_0797 at 903.096 kb on + strand, within Psyr_0797 at 903.096 kb on + strand, within Psyr_0797 at 903.097 kb on - strand, within Psyr_0797 at 903.097 kb on - strand, within Psyr_0797 at 903.097 kb on - strand, within Psyr_0797 at 903.097 kb on - strand, within Psyr_0797 at 903.099 kb on + strand, within Psyr_0797 at 903.099 kb on + strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.124 kb on + strand, within Psyr_0797 at 903.158 kb on + strand, within Psyr_0797 at 903.402 kb on + strand at 903.402 kb on + strand at 903.403 kb on - strand at 903.417 kb on - strand at 903.444 kb on - strand at 903.447 kb on - strand at 903.475 kb on + strand at 903.510 kb on + strand at 903.511 kb on - strand at 903.547 kb on + strand at 903.559 kb on + strand at 903.559 kb on + strand at 903.560 kb on - strand at 903.560 kb on - strand at 903.687 kb on + strand, within Psyr_0798 at 903.744 kb on + strand, within Psyr_0798 at 903.746 kb on + strand, within Psyr_0798 at 903.747 kb on - strand, within Psyr_0798 at 903.752 kb on - strand, within Psyr_0798 at 903.752 kb on - strand, within Psyr_0798 at 903.752 kb on - strand, within Psyr_0798 at 903.808 kb on + strand, within Psyr_0798 at 903.841 kb on + strand, within Psyr_0798 at 903.841 kb on + strand, within Psyr_0798 at 903.841 kb on + strand, within Psyr_0798 at 903.841 kb on + strand, within Psyr_0798 at 903.841 kb on + strand, within Psyr_0798 at 903.841 kb on + strand, within Psyr_0798 at 903.841 kb on + strand, within Psyr_0798 at 903.841 kb on + strand, within Psyr_0798 at 903.842 kb on - strand, within Psyr_0798 at 903.842 kb on - strand, within Psyr_0798 at 903.842 kb on - strand, within Psyr_0798 at 903.842 kb on - strand, within Psyr_0798 at 903.842 kb on - strand, within Psyr_0798 at 903.842 kb on - strand, within Psyr_0798 at 903.842 kb on - strand, within Psyr_0798 at 903.842 kb on - strand, within Psyr_0798 at 903.842 kb on - strand, within Psyr_0798 at 903.842 kb on - strand, within Psyr_0798 at 903.862 kb on + strand, within Psyr_0798 at 903.880 kb on + strand, within Psyr_0798 at 903.968 kb on - strand, within Psyr_0798 at 903.968 kb on - strand, within Psyr_0798 at 904.019 kb on + strand, within Psyr_0798 at 904.165 kb on + strand, within Psyr_0798 at 904.181 kb on + strand, within Psyr_0798 at 904.181 kb on + strand, within Psyr_0798 at 904.182 kb on - strand, within Psyr_0798 at 904.182 kb on - strand, within Psyr_0798 at 904.200 kb on + strand, within Psyr_0798 at 904.208 kb on + strand, within Psyr_0798 at 904.208 kb on + strand, within Psyr_0798 at 904.208 kb on + strand, within Psyr_0798 at 904.208 kb on + strand, within Psyr_0798 at 904.208 kb on + strand, within Psyr_0798 at 904.208 kb on + strand, within Psyr_0798 at 904.208 kb on + strand, within Psyr_0798 at 904.208 kb on + strand, within Psyr_0798 at 904.208 kb on + strand, within Psyr_0798 at 904.208 kb on + strand, within Psyr_0798 at 904.208 kb on + strand, within Psyr_0798 at 904.208 kb on + strand, within Psyr_0798 at 904.208 kb on + strand, within Psyr_0798 at 904.209 kb on - strand, within Psyr_0798 at 904.209 kb on - strand, within Psyr_0798 at 904.209 kb on - strand, within Psyr_0798 at 904.209 kb on - strand, within Psyr_0798 at 904.209 kb on - strand, within Psyr_0798 at 904.264 kb on + strand, within Psyr_0798 at 904.274 kb on + strand, within Psyr_0798 at 904.274 kb on + strand, within Psyr_0798 at 904.274 kb on + strand, within Psyr_0798 at 904.275 kb on - strand, within Psyr_0798 at 904.278 kb on + strand, within Psyr_0798 at 904.278 kb on + strand, within Psyr_0798 at 904.278 kb on + strand, within Psyr_0798 at 904.278 kb on + strand, within Psyr_0798 at 904.278 kb on + strand, within Psyr_0798 at 904.278 kb on + strand, within Psyr_0798 at 904.278 kb on + strand, within Psyr_0798 at 904.278 kb on + strand, within Psyr_0798 at 904.278 kb on + strand, within Psyr_0798 at 904.279 kb on - strand, within Psyr_0798 at 904.279 kb on - strand, within Psyr_0798 at 904.355 kb on + strand, within Psyr_0798 at 904.355 kb on + strand, within Psyr_0798 at 904.355 kb on + strand, within Psyr_0798 at 904.504 kb on + strand, within Psyr_0798 at 904.504 kb on + strand, within Psyr_0798 at 904.617 kb on - strand, within Psyr_0798 at 904.633 kb on + strand, within Psyr_0798 at 904.687 kb on + strand, within Psyr_0798 at 904.687 kb on + strand, within Psyr_0798 at 904.688 kb on - strand, within Psyr_0798 at 904.688 kb on - strand, within Psyr_0798 at 904.688 kb on - strand, within Psyr_0798 at 904.691 kb on + strand, within Psyr_0798 at 904.692 kb on - strand, within Psyr_0798 at 904.692 kb on - strand, within Psyr_0798 at 904.692 kb on - strand, within Psyr_0798 at 904.692 kb on - strand, within Psyr_0798 at 904.909 kb on + strand, within Psyr_0798 at 905.082 kb on + strand at 905.082 kb on + strand at 905.082 kb on + strand at 905.082 kb on + strand at 905.083 kb on - strand at 905.083 kb on - strand at 905.121 kb on + strand at 905.121 kb on + strand at 905.146 kb on + strand at 905.146 kb on + strand at 905.147 kb on - strand at 905.147 kb on - strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.151 kb on - strand at 905.151 kb on - strand at 905.151 kb on - strand at 905.203 kb on + strand at 905.203 kb on + strand at 905.204 kb on - strand at 905.204 kb on - strand at 905.262 kb on + strand at 905.262 kb on + strand at 905.262 kb on + strand at 905.262 kb on + strand at 905.263 kb on - strand at 905.263 kb on - strand at 905.263 kb on - strand at 905.315 kb on + strand at 905.316 kb on - strand at 905.316 kb on - strand at 905.316 kb on - strand at 905.316 kb on - strand at 905.317 kb on + strand at 905.318 kb on - strand at 905.337 kb on + strand at 905.337 kb on + strand at 905.337 kb on + strand at 905.404 kb on + strand at 905.404 kb on + strand at 905.404 kb on + strand at 905.404 kb on + strand at 905.405 kb on - strand at 905.405 kb on - strand at 905.405 kb on - strand at 905.405 kb on - strand at 905.405 kb on - strand at 905.405 kb on - strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.428 kb on + strand at 905.428 kb on + strand at 905.428 kb on + strand at 905.429 kb on - strand at 905.429 kb on - strand at 905.429 kb on - strand at 905.429 kb on - strand at 905.429 kb on - strand at 905.449 kb on + strand at 905.449 kb on + strand at 905.449 kb on + strand at 905.450 kb on - strand at 905.526 kb on - strand, within Psyr_0799 at 905.528 kb on - strand, within Psyr_0799 at 905.570 kb on - strand, within Psyr_0799 at 905.573 kb on + strand, within Psyr_0799 at 905.574 kb on - strand, within Psyr_0799 at 905.627 kb on - strand, within Psyr_0799 at 905.638 kb on + strand, within Psyr_0799 at 905.639 kb on - strand, within Psyr_0799 at 905.639 kb on - strand, within Psyr_0799 at 905.663 kb on - strand, within Psyr_0799 at 905.673 kb on + strand, within Psyr_0799 at 905.673 kb on + strand, within Psyr_0799 at 905.674 kb on - strand, within Psyr_0799 at 905.716 kb on + strand, within Psyr_0799 at 905.716 kb on + strand, within Psyr_0799 at 905.722 kb on + strand, within Psyr_0799 at 905.723 kb on - strand, within Psyr_0799 at 905.723 kb on - strand, within Psyr_0799 at 905.725 kb on + strand, within Psyr_0799 at 905.779 kb on + strand, within Psyr_0799 at 905.861 kb on + strand at 905.862 kb on - strand at 905.862 kb on - strand at 905.862 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 906.007 kb on + strand at 906.059 kb on - strand at 906.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Veratrine 10 mM remove 902,549 + Psyr_0797 0.21 -0.8 902,572 - Psyr_0797 0.23 -0.7 902,596 - Psyr_0797 0.25 -2.2 902,598 + Psyr_0797 0.25 +3.2 902,598 + Psyr_0797 0.25 -0.7 902,598 + Psyr_0797 0.25 -0.8 902,598 + Psyr_0797 0.25 +0.8 902,598 + Psyr_0797 0.25 -0.6 902,598 + Psyr_0797 0.25 -0.6 902,599 - Psyr_0797 0.25 -0.3 902,599 - Psyr_0797 0.25 -1.0 902,599 - Psyr_0797 0.25 +2.8 902,599 - Psyr_0797 0.25 -0.7 902,599 - Psyr_0797 0.25 +0.8 902,599 - Psyr_0797 0.25 -0.7 902,599 - Psyr_0797 0.25 +1.9 902,599 - Psyr_0797 0.25 -0.3 902,779 + Psyr_0797 0.40 -0.2 902,780 - Psyr_0797 0.40 +0.3 902,780 - Psyr_0797 0.40 -1.7 902,845 - Psyr_0797 0.46 -0.8 902,845 - Psyr_0797 0.46 -0.6 902,955 + Psyr_0797 0.55 -3.5 903,039 - Psyr_0797 0.62 +0.2 903,040 + Psyr_0797 0.62 +1.5 903,040 + Psyr_0797 0.62 -2.3 903,040 + Psyr_0797 0.62 +1.0 903,040 + Psyr_0797 0.62 +0.1 903,040 + Psyr_0797 0.62 -0.5 903,040 + Psyr_0797 0.62 -0.6 903,041 - Psyr_0797 0.62 +1.2 903,041 - Psyr_0797 0.62 -0.9 903,041 - Psyr_0797 0.62 -0.4 903,041 - Psyr_0797 0.62 -1.3 903,041 - Psyr_0797 0.62 +0.4 903,096 + Psyr_0797 0.66 -1.5 903,096 + Psyr_0797 0.66 -2.3 903,097 - Psyr_0797 0.66 -2.1 903,097 - Psyr_0797 0.66 +1.7 903,097 - Psyr_0797 0.66 +1.2 903,097 - Psyr_0797 0.66 -0.9 903,099 + Psyr_0797 0.67 +0.5 903,099 + Psyr_0797 0.67 -0.8 903,100 - Psyr_0797 0.67 -1.6 903,100 - Psyr_0797 0.67 +0.4 903,100 - Psyr_0797 0.67 -0.8 903,124 + Psyr_0797 0.69 +0.5 903,158 + Psyr_0797 0.71 -0.6 903,402 + -2.9 903,402 + -0.8 903,403 - -1.1 903,417 - -2.1 903,444 - -0.4 903,447 - -0.6 903,475 + -0.3 903,510 + -0.2 903,511 - -0.4 903,547 + -0.4 903,559 + -2.3 903,559 + +0.0 903,560 - -0.5 903,560 - +1.3 903,687 + Psyr_0798 0.11 -0.6 903,744 + Psyr_0798 0.14 +2.3 903,746 + Psyr_0798 0.14 -0.4 903,747 - Psyr_0798 0.14 -0.3 903,752 - Psyr_0798 0.14 -0.4 903,752 - Psyr_0798 0.14 +0.4 903,752 - Psyr_0798 0.14 -0.7 903,808 + Psyr_0798 0.18 -0.6 903,841 + Psyr_0798 0.20 -0.1 903,841 + Psyr_0798 0.20 -1.3 903,841 + Psyr_0798 0.20 +2.9 903,841 + Psyr_0798 0.20 +0.4 903,841 + Psyr_0798 0.20 -0.5 903,841 + Psyr_0798 0.20 +2.4 903,841 + Psyr_0798 0.20 -1.9 903,841 + Psyr_0798 0.20 -0.3 903,842 - Psyr_0798 0.20 -0.6 903,842 - Psyr_0798 0.20 +2.3 903,842 - Psyr_0798 0.20 +0.7 903,842 - Psyr_0798 0.20 -0.7 903,842 - Psyr_0798 0.20 -0.8 903,842 - Psyr_0798 0.20 +2.0 903,842 - Psyr_0798 0.20 -0.4 903,842 - Psyr_0798 0.20 -0.0 903,842 - Psyr_0798 0.20 -2.0 903,842 - Psyr_0798 0.20 -0.5 903,862 + Psyr_0798 0.21 -0.2 903,880 + Psyr_0798 0.22 +0.2 903,968 - Psyr_0798 0.27 +1.0 903,968 - Psyr_0798 0.27 -0.9 904,019 + Psyr_0798 0.30 -1.0 904,165 + Psyr_0798 0.39 +0.6 904,181 + Psyr_0798 0.40 -0.9 904,181 + Psyr_0798 0.40 -1.0 904,182 - Psyr_0798 0.40 +0.3 904,182 - Psyr_0798 0.40 -0.7 904,200 + Psyr_0798 0.41 +0.2 904,208 + Psyr_0798 0.41 -1.0 904,208 + Psyr_0798 0.41 -1.2 904,208 + Psyr_0798 0.41 +0.2 904,208 + Psyr_0798 0.41 +1.4 904,208 + Psyr_0798 0.41 +0.2 904,208 + Psyr_0798 0.41 +0.0 904,208 + Psyr_0798 0.41 -0.4 904,208 + Psyr_0798 0.41 -0.1 904,208 + Psyr_0798 0.41 +1.8 904,208 + Psyr_0798 0.41 -2.2 904,208 + Psyr_0798 0.41 +0.1 904,208 + Psyr_0798 0.41 -1.2 904,208 + Psyr_0798 0.41 -1.2 904,209 - Psyr_0798 0.41 -0.2 904,209 - Psyr_0798 0.41 +1.1 904,209 - Psyr_0798 0.41 +0.4 904,209 - Psyr_0798 0.41 -0.0 904,209 - Psyr_0798 0.41 -2.5 904,264 + Psyr_0798 0.45 -1.4 904,274 + Psyr_0798 0.45 +2.2 904,274 + Psyr_0798 0.45 +0.7 904,274 + Psyr_0798 0.45 -0.2 904,275 - Psyr_0798 0.45 +1.6 904,278 + Psyr_0798 0.45 -2.2 904,278 + Psyr_0798 0.45 +0.1 904,278 + Psyr_0798 0.45 +0.5 904,278 + Psyr_0798 0.45 +0.8 904,278 + Psyr_0798 0.45 -1.0 904,278 + Psyr_0798 0.45 +0.8 904,278 + Psyr_0798 0.45 +1.1 904,278 + Psyr_0798 0.45 -1.0 904,278 + Psyr_0798 0.45 +1.9 904,279 - Psyr_0798 0.45 +0.2 904,279 - Psyr_0798 0.45 -1.5 904,355 + Psyr_0798 0.50 -2.7 904,355 + Psyr_0798 0.50 +0.6 904,355 + Psyr_0798 0.50 +0.1 904,504 + Psyr_0798 0.59 -0.5 904,504 + Psyr_0798 0.59 -0.6 904,617 - Psyr_0798 0.65 +0.4 904,633 + Psyr_0798 0.66 -0.7 904,687 + Psyr_0798 0.69 +1.6 904,687 + Psyr_0798 0.69 -0.7 904,688 - Psyr_0798 0.70 -1.0 904,688 - Psyr_0798 0.70 +0.2 904,688 - Psyr_0798 0.70 -0.6 904,691 + Psyr_0798 0.70 +1.6 904,692 - Psyr_0798 0.70 +0.1 904,692 - Psyr_0798 0.70 +2.2 904,692 - Psyr_0798 0.70 +0.1 904,692 - Psyr_0798 0.70 -1.8 904,909 + Psyr_0798 0.83 -0.3 905,082 + +0.0 905,082 + -0.8 905,082 + -0.2 905,082 + -0.4 905,083 - -1.4 905,083 - +1.2 905,121 + -1.0 905,121 + -0.9 905,146 + +3.2 905,146 + -1.7 905,147 - +0.5 905,147 - -0.4 905,150 + +0.9 905,150 + -1.6 905,150 + +0.7 905,150 + +0.3 905,150 + +0.8 905,150 + -0.4 905,150 + +0.8 905,150 + -0.1 905,151 - -2.0 905,151 - -0.9 905,151 - -0.7 905,203 + -0.1 905,203 + -0.3 905,204 - +1.2 905,204 - +0.4 905,262 + -2.1 905,262 + +0.6 905,262 + -0.3 905,262 + -1.2 905,263 - +0.9 905,263 - +0.2 905,263 - +0.3 905,315 + -0.3 905,316 - +1.2 905,316 - +0.2 905,316 - -0.6 905,316 - -0.0 905,317 + -0.1 905,318 - +4.0 905,337 + +0.3 905,337 + -0.0 905,337 + -0.0 905,404 + +1.4 905,404 + +0.6 905,404 + -1.0 905,404 + -0.9 905,405 - -0.2 905,405 - -3.3 905,405 - -4.1 905,405 - -3.9 905,405 - -0.8 905,405 - -0.3 905,424 + +0.3 905,424 + +1.2 905,424 + -1.4 905,424 + -2.6 905,424 + -1.0 905,424 + +0.1 905,425 - -0.4 905,425 - -0.0 905,425 - -0.2 905,428 + -0.3 905,428 + +1.3 905,428 + -1.4 905,429 - -0.9 905,429 - -0.6 905,429 - +0.4 905,429 - -0.6 905,429 - +0.3 905,449 + -1.9 905,449 + +1.5 905,449 + +1.9 905,450 - -0.4 905,526 - Psyr_0799 0.23 -0.4 905,528 - Psyr_0799 0.24 -1.0 905,570 - Psyr_0799 0.34 +0.3 905,573 + Psyr_0799 0.34 -0.3 905,574 - Psyr_0799 0.35 -1.0 905,627 - Psyr_0799 0.47 -1.6 905,638 + Psyr_0799 0.50 +0.1 905,639 - Psyr_0799 0.50 -2.6 905,639 - Psyr_0799 0.50 -3.1 905,663 - Psyr_0799 0.56 +0.6 905,673 + Psyr_0799 0.58 -0.4 905,673 + Psyr_0799 0.58 -0.5 905,674 - Psyr_0799 0.58 +0.5 905,716 + Psyr_0799 0.68 -0.7 905,716 + Psyr_0799 0.68 -0.6 905,722 + Psyr_0799 0.70 +1.8 905,723 - Psyr_0799 0.70 -0.0 905,723 - Psyr_0799 0.70 +0.3 905,725 + Psyr_0799 0.70 +1.1 905,779 + Psyr_0799 0.83 -1.8 905,861 + -2.7 905,862 - -1.4 905,862 - -1.3 905,862 - +1.3 905,882 - +0.2 905,882 - -1.1 906,007 + +1.5 906,059 - -1.5 906,059 - +2.1
Or see this region's nucleotide sequence