Experiment: KB with Veratrine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0354 and Psyr_0355 are separated by 387 nucleotides Psyr_0355 and Psyr_0356 are separated by 577 nucleotides
Psyr_0354: Psyr_0354 - Acyl-CoA dehydrogenase, C-terminal, at 378,980 to 380,302
_0354
Psyr_0355: Psyr_0355 - conserved hypothetical protein, at 380,690 to 381,409
_0355
Psyr_0356: Psyr_0356 - L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein, at 381,987 to 382,730
_0356
Position (kb) 380
381
382 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 379.710 kb on + strand, within Psyr_0354 at 379.710 kb on + strand, within Psyr_0354 at 379.710 kb on + strand, within Psyr_0354 at 379.710 kb on + strand, within Psyr_0354 at 379.711 kb on - strand, within Psyr_0354 at 379.976 kb on + strand, within Psyr_0354 at 379.976 kb on + strand, within Psyr_0354 at 379.977 kb on - strand, within Psyr_0354 at 380.011 kb on + strand, within Psyr_0354 at 380.011 kb on + strand, within Psyr_0354 at 380.011 kb on + strand, within Psyr_0354 at 380.012 kb on - strand, within Psyr_0354 at 380.012 kb on - strand, within Psyr_0354 at 380.272 kb on + strand at 380.284 kb on + strand at 380.284 kb on + strand at 380.284 kb on + strand at 380.284 kb on + strand at 380.285 kb on - strand at 380.285 kb on - strand at 380.285 kb on - strand at 380.371 kb on + strand at 380.371 kb on + strand at 380.371 kb on + strand at 380.372 kb on - strand at 380.372 kb on - strand at 380.374 kb on - strand at 380.375 kb on + strand at 380.388 kb on + strand at 380.389 kb on - strand at 380.391 kb on - strand at 380.433 kb on + strand at 380.433 kb on + strand at 380.433 kb on + strand at 380.433 kb on + strand at 380.433 kb on + strand at 380.434 kb on - strand at 380.434 kb on - strand at 380.461 kb on + strand at 380.462 kb on - strand at 380.486 kb on + strand at 380.486 kb on + strand at 380.486 kb on + strand at 380.486 kb on + strand at 380.486 kb on + strand at 380.486 kb on + strand at 380.486 kb on + strand at 380.486 kb on + strand at 380.486 kb on + strand at 380.487 kb on - strand at 380.487 kb on - strand at 380.487 kb on - strand at 380.487 kb on - strand at 380.487 kb on - strand at 380.487 kb on - strand at 380.510 kb on - strand at 380.575 kb on + strand at 380.575 kb on + strand at 380.576 kb on - strand at 380.581 kb on + strand at 380.612 kb on + strand at 380.646 kb on + strand at 380.647 kb on - strand at 380.714 kb on + strand at 380.714 kb on + strand at 380.714 kb on + strand at 380.715 kb on - strand at 380.715 kb on - strand at 380.717 kb on + strand at 380.717 kb on + strand at 380.718 kb on - strand at 380.718 kb on - strand at 380.719 kb on + strand at 380.720 kb on - strand at 380.769 kb on + strand, within Psyr_0355 at 380.769 kb on + strand, within Psyr_0355 at 380.770 kb on - strand, within Psyr_0355 at 380.770 kb on - strand, within Psyr_0355 at 380.770 kb on - strand, within Psyr_0355 at 380.770 kb on - strand, within Psyr_0355 at 380.897 kb on + strand, within Psyr_0355 at 380.897 kb on + strand, within Psyr_0355 at 380.897 kb on + strand, within Psyr_0355 at 380.897 kb on + strand, within Psyr_0355 at 380.897 kb on + strand, within Psyr_0355 at 380.897 kb on + strand, within Psyr_0355 at 380.897 kb on + strand, within Psyr_0355 at 380.898 kb on - strand, within Psyr_0355 at 380.898 kb on - strand, within Psyr_0355 at 380.898 kb on - strand, within Psyr_0355 at 380.898 kb on - strand, within Psyr_0355 at 380.898 kb on - strand, within Psyr_0355 at 380.898 kb on - strand, within Psyr_0355 at 380.898 kb on - strand, within Psyr_0355 at 380.898 kb on - strand, within Psyr_0355 at 380.898 kb on - strand, within Psyr_0355 at 380.898 kb on - strand, within Psyr_0355 at 380.898 kb on - strand, within Psyr_0355 at 380.931 kb on + strand, within Psyr_0355 at 381.009 kb on + strand, within Psyr_0355 at 381.009 kb on + strand, within Psyr_0355 at 381.009 kb on + strand, within Psyr_0355 at 381.009 kb on + strand, within Psyr_0355 at 381.009 kb on + strand, within Psyr_0355 at 381.009 kb on + strand, within Psyr_0355 at 381.010 kb on - strand, within Psyr_0355 at 381.010 kb on - strand, within Psyr_0355 at 381.010 kb on - strand, within Psyr_0355 at 381.010 kb on - strand, within Psyr_0355 at 381.086 kb on + strand, within Psyr_0355 at 381.087 kb on - strand, within Psyr_0355 at 381.087 kb on - strand, within Psyr_0355 at 381.087 kb on - strand, within Psyr_0355 at 381.141 kb on + strand, within Psyr_0355 at 381.141 kb on + strand, within Psyr_0355 at 381.141 kb on + strand, within Psyr_0355 at 381.141 kb on + strand, within Psyr_0355 at 381.141 kb on + strand, within Psyr_0355 at 381.141 kb on + strand, within Psyr_0355 at 381.141 kb on + strand, within Psyr_0355 at 381.141 kb on + strand, within Psyr_0355 at 381.142 kb on - strand, within Psyr_0355 at 381.142 kb on - strand, within Psyr_0355 at 381.142 kb on - strand, within Psyr_0355 at 381.185 kb on + strand, within Psyr_0355 at 381.185 kb on + strand, within Psyr_0355 at 381.185 kb on + strand, within Psyr_0355 at 381.185 kb on + strand, within Psyr_0355 at 381.186 kb on - strand, within Psyr_0355 at 381.186 kb on - strand, within Psyr_0355 at 381.186 kb on - strand, within Psyr_0355 at 381.186 kb on - strand, within Psyr_0355 at 381.186 kb on - strand, within Psyr_0355 at 381.237 kb on + strand, within Psyr_0355 at 381.237 kb on + strand, within Psyr_0355 at 381.238 kb on - strand, within Psyr_0355 at 381.332 kb on + strand, within Psyr_0355 at 381.333 kb on - strand, within Psyr_0355 at 381.380 kb on - strand at 381.427 kb on - strand at 381.433 kb on + strand at 381.433 kb on + strand at 381.506 kb on + strand at 381.511 kb on + strand at 381.536 kb on + strand at 381.655 kb on - strand at 381.683 kb on + strand at 381.683 kb on + strand at 381.683 kb on + strand at 381.684 kb on - strand at 381.710 kb on - strand at 381.732 kb on + strand at 381.732 kb on + strand at 381.733 kb on - strand at 381.852 kb on + strand at 381.911 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Veratrine 10 mM remove 379,710 + Psyr_0354 0.55 -1.0 379,710 + Psyr_0354 0.55 +1.2 379,710 + Psyr_0354 0.55 +1.2 379,710 + Psyr_0354 0.55 -0.0 379,711 - Psyr_0354 0.55 +0.3 379,976 + Psyr_0354 0.75 +4.4 379,976 + Psyr_0354 0.75 +0.3 379,977 - Psyr_0354 0.75 -2.6 380,011 + Psyr_0354 0.78 -0.3 380,011 + Psyr_0354 0.78 -1.6 380,011 + Psyr_0354 0.78 -0.2 380,012 - Psyr_0354 0.78 +0.0 380,012 - Psyr_0354 0.78 +1.0 380,272 + -0.4 380,284 + -0.4 380,284 + -0.7 380,284 + -0.4 380,284 + +0.9 380,285 - +1.6 380,285 - +1.3 380,285 - -0.4 380,371 + +1.0 380,371 + -0.4 380,371 + -1.1 380,372 - -0.1 380,372 - -0.0 380,374 - -0.0 380,375 + -0.7 380,388 + +0.8 380,389 - +1.2 380,391 - -0.8 380,433 + -0.6 380,433 + +1.8 380,433 + -0.9 380,433 + -2.0 380,433 + -3.1 380,434 - +0.5 380,434 - +0.9 380,461 + -0.3 380,462 - -0.8 380,486 + -0.1 380,486 + +0.1 380,486 + -0.4 380,486 + +1.2 380,486 + -1.4 380,486 + -0.6 380,486 + -1.4 380,486 + +1.2 380,486 + +1.2 380,487 - -0.4 380,487 - -1.4 380,487 - +1.7 380,487 - +0.6 380,487 - +1.1 380,487 - -0.3 380,510 - +1.5 380,575 + -0.0 380,575 + +0.1 380,576 - +0.9 380,581 + +0.0 380,612 + -0.0 380,646 + +0.5 380,647 - -0.3 380,714 + -0.6 380,714 + +0.8 380,714 + -4.1 380,715 - -0.1 380,715 - +1.5 380,717 + +0.9 380,717 + -2.4 380,718 - -1.1 380,718 - -0.2 380,719 + -0.5 380,720 - -0.4 380,769 + Psyr_0355 0.11 +0.5 380,769 + Psyr_0355 0.11 +0.1 380,770 - Psyr_0355 0.11 +0.6 380,770 - Psyr_0355 0.11 -0.0 380,770 - Psyr_0355 0.11 -3.2 380,770 - Psyr_0355 0.11 -0.0 380,897 + Psyr_0355 0.29 +2.4 380,897 + Psyr_0355 0.29 +0.4 380,897 + Psyr_0355 0.29 +0.4 380,897 + Psyr_0355 0.29 +0.4 380,897 + Psyr_0355 0.29 -1.1 380,897 + Psyr_0355 0.29 +1.1 380,897 + Psyr_0355 0.29 -0.3 380,898 - Psyr_0355 0.29 +0.8 380,898 - Psyr_0355 0.29 -1.0 380,898 - Psyr_0355 0.29 -0.8 380,898 - Psyr_0355 0.29 -0.1 380,898 - Psyr_0355 0.29 +1.0 380,898 - Psyr_0355 0.29 -0.5 380,898 - Psyr_0355 0.29 +0.5 380,898 - Psyr_0355 0.29 +0.3 380,898 - Psyr_0355 0.29 -0.5 380,898 - Psyr_0355 0.29 -1.3 380,898 - Psyr_0355 0.29 -0.5 380,931 + Psyr_0355 0.33 -0.6 381,009 + Psyr_0355 0.44 -2.4 381,009 + Psyr_0355 0.44 +0.1 381,009 + Psyr_0355 0.44 -1.3 381,009 + Psyr_0355 0.44 +0.1 381,009 + Psyr_0355 0.44 +0.4 381,009 + Psyr_0355 0.44 +0.1 381,010 - Psyr_0355 0.44 -0.3 381,010 - Psyr_0355 0.44 +0.8 381,010 - Psyr_0355 0.44 -0.4 381,010 - Psyr_0355 0.44 +0.5 381,086 + Psyr_0355 0.55 -2.1 381,087 - Psyr_0355 0.55 -2.4 381,087 - Psyr_0355 0.55 -0.1 381,087 - Psyr_0355 0.55 +1.2 381,141 + Psyr_0355 0.63 +1.9 381,141 + Psyr_0355 0.63 +3.0 381,141 + Psyr_0355 0.63 -0.4 381,141 + Psyr_0355 0.63 +1.9 381,141 + Psyr_0355 0.63 +1.2 381,141 + Psyr_0355 0.63 -0.1 381,141 + Psyr_0355 0.63 +0.5 381,141 + Psyr_0355 0.63 -0.5 381,142 - Psyr_0355 0.63 -1.1 381,142 - Psyr_0355 0.63 -0.0 381,142 - Psyr_0355 0.63 -1.1 381,185 + Psyr_0355 0.69 +0.9 381,185 + Psyr_0355 0.69 -0.0 381,185 + Psyr_0355 0.69 -0.4 381,185 + Psyr_0355 0.69 -0.4 381,186 - Psyr_0355 0.69 -1.3 381,186 - Psyr_0355 0.69 +1.1 381,186 - Psyr_0355 0.69 -0.3 381,186 - Psyr_0355 0.69 +0.5 381,186 - Psyr_0355 0.69 +0.8 381,237 + Psyr_0355 0.76 +0.6 381,237 + Psyr_0355 0.76 -0.4 381,238 - Psyr_0355 0.76 +1.4 381,332 + Psyr_0355 0.89 +0.7 381,333 - Psyr_0355 0.89 -0.6 381,380 - -1.8 381,427 - -1.4 381,433 + +2.2 381,433 + -1.5 381,506 + -2.2 381,511 + +0.2 381,536 + -0.4 381,655 - -3.1 381,683 + +0.3 381,683 + -0.2 381,683 + +0.2 381,684 - +4.4 381,710 - +1.6 381,732 + -1.0 381,732 + +0.2 381,733 - -1.0 381,852 + +0.1 381,911 + +0.9
Or see this region's nucleotide sequence