Experiment: KB with Harmol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4387 and Psyr_4388 are separated by 108 nucleotides Psyr_4388 and Psyr_4389 are separated by 42 nucleotides Psyr_4389 and Psyr_4390 are separated by 331 nucleotides
Psyr_4387: Psyr_4387 - Glycosyl transferase, family 51:Penicillin-binding protein, transpeptidase:Penicillin-binding, C-terminal, at 5,248,303 to 5,250,651
_4387
Psyr_4388: Psyr_4388 - Response regulator receiver, at 5,250,760 to 5,251,167
_4388
Psyr_4389: Psyr_4389 - Flp/Fap pilin component, at 5,251,210 to 5,251,416
_4389
Psyr_4390: Psyr_4390 - Flp pilus assembly CpaB, at 5,251,748 to 5,252,707
_4390
Position (kb) 5251
5252 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5250.593 kb on + strand at 5250.593 kb on + strand at 5250.593 kb on + strand at 5250.594 kb on - strand at 5250.827 kb on + strand, within Psyr_4388 at 5250.828 kb on - strand, within Psyr_4388 at 5250.828 kb on - strand, within Psyr_4388 at 5250.828 kb on - strand, within Psyr_4388 at 5251.174 kb on - strand at 5251.201 kb on - strand at 5251.201 kb on - strand at 5251.201 kb on - strand at 5251.201 kb on - strand at 5251.203 kb on + strand at 5251.211 kb on + strand at 5251.211 kb on + strand at 5251.211 kb on + strand at 5251.212 kb on - strand at 5251.212 kb on - strand at 5251.212 kb on - strand at 5251.217 kb on - strand at 5251.221 kb on + strand at 5251.221 kb on + strand at 5251.224 kb on + strand at 5251.225 kb on - strand at 5251.245 kb on + strand, within Psyr_4389 at 5251.245 kb on + strand, within Psyr_4389 at 5251.266 kb on + strand, within Psyr_4389 at 5251.267 kb on - strand, within Psyr_4389 at 5251.332 kb on - strand, within Psyr_4389 at 5251.377 kb on + strand, within Psyr_4389 at 5251.378 kb on - strand, within Psyr_4389 at 5251.378 kb on - strand, within Psyr_4389 at 5251.385 kb on + strand, within Psyr_4389 at 5251.385 kb on + strand, within Psyr_4389 at 5251.385 kb on + strand, within Psyr_4389 at 5251.386 kb on - strand, within Psyr_4389 at 5251.386 kb on - strand, within Psyr_4389 at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.397 kb on + strand at 5251.398 kb on - strand at 5251.398 kb on - strand at 5251.398 kb on - strand at 5251.398 kb on - strand at 5251.398 kb on - strand at 5251.450 kb on - strand at 5251.465 kb on + strand at 5251.465 kb on + strand at 5251.465 kb on + strand at 5251.465 kb on + strand at 5251.465 kb on + strand at 5251.466 kb on - strand at 5251.466 kb on - strand at 5251.466 kb on - strand at 5251.466 kb on - strand at 5251.467 kb on + strand at 5251.467 kb on + strand at 5251.467 kb on + strand at 5251.467 kb on + strand at 5251.467 kb on + strand at 5251.467 kb on + strand at 5251.467 kb on + strand at 5251.467 kb on + strand at 5251.467 kb on + strand at 5251.467 kb on + strand at 5251.468 kb on - strand at 5251.468 kb on - strand at 5251.468 kb on - strand at 5251.468 kb on - strand at 5251.468 kb on - strand at 5251.468 kb on - strand at 5251.541 kb on + strand at 5251.581 kb on - strand at 5251.607 kb on + strand at 5251.642 kb on + strand at 5251.642 kb on + strand at 5251.643 kb on - strand at 5251.643 kb on - strand at 5251.643 kb on - strand at 5251.677 kb on - strand at 5251.679 kb on + strand at 5251.680 kb on - strand at 5251.680 kb on - strand at 5251.680 kb on - strand at 5251.973 kb on + strand, within Psyr_4390 at 5251.974 kb on - strand, within Psyr_4390 at 5251.974 kb on - strand, within Psyr_4390 at 5251.974 kb on - strand, within Psyr_4390 at 5252.223 kb on - strand, within Psyr_4390 at 5252.223 kb on - strand, within Psyr_4390 at 5252.223 kb on - strand, within Psyr_4390 at 5252.223 kb on - strand, within Psyr_4390 at 5252.232 kb on + strand, within Psyr_4390 at 5252.233 kb on - strand, within Psyr_4390 at 5252.233 kb on - strand, within Psyr_4390 at 5252.233 kb on - strand, within Psyr_4390 at 5252.233 kb on - strand, within Psyr_4390 at 5252.233 kb on - strand, within Psyr_4390 at 5252.241 kb on - strand, within Psyr_4390
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmol 10 mM remove 5,250,593 + -0.7 5,250,593 + +1.5 5,250,593 + +1.0 5,250,594 - -0.4 5,250,827 + Psyr_4388 0.16 -0.7 5,250,828 - Psyr_4388 0.17 +1.5 5,250,828 - Psyr_4388 0.17 -0.5 5,250,828 - Psyr_4388 0.17 -0.2 5,251,174 - -0.2 5,251,201 - -0.3 5,251,201 - +0.7 5,251,201 - +1.9 5,251,201 - -2.1 5,251,203 + -1.1 5,251,211 + -2.6 5,251,211 + +2.5 5,251,211 + -0.5 5,251,212 - +1.8 5,251,212 - -0.9 5,251,212 - +1.2 5,251,217 - -0.9 5,251,221 + -1.4 5,251,221 + -0.1 5,251,224 + -2.4 5,251,225 - -0.1 5,251,245 + Psyr_4389 0.17 -2.1 5,251,245 + Psyr_4389 0.17 +0.1 5,251,266 + Psyr_4389 0.27 +0.0 5,251,267 - Psyr_4389 0.28 +1.7 5,251,332 - Psyr_4389 0.59 +1.1 5,251,377 + Psyr_4389 0.81 -0.8 5,251,378 - Psyr_4389 0.81 +0.5 5,251,378 - Psyr_4389 0.81 +1.0 5,251,385 + Psyr_4389 0.85 +1.3 5,251,385 + Psyr_4389 0.85 -2.7 5,251,385 + Psyr_4389 0.85 +2.6 5,251,386 - Psyr_4389 0.85 -1.3 5,251,386 - Psyr_4389 0.85 +0.6 5,251,397 + +0.4 5,251,397 + -0.3 5,251,397 + +0.8 5,251,397 + +0.4 5,251,397 + +0.6 5,251,397 + -3.6 5,251,397 + -1.4 5,251,398 - +0.8 5,251,398 - +0.0 5,251,398 - +1.9 5,251,398 - +1.1 5,251,398 - -1.4 5,251,450 - +0.1 5,251,465 + -0.7 5,251,465 + -0.8 5,251,465 + +0.1 5,251,465 + +1.5 5,251,465 + -0.5 5,251,466 - +0.6 5,251,466 - -1.5 5,251,466 - +0.4 5,251,466 - -1.1 5,251,467 + +3.3 5,251,467 + +0.4 5,251,467 + -2.6 5,251,467 + +0.4 5,251,467 + +3.0 5,251,467 + +0.6 5,251,467 + +0.5 5,251,467 + -0.7 5,251,467 + +0.1 5,251,467 + -0.7 5,251,468 - +0.6 5,251,468 - -0.6 5,251,468 - -2.1 5,251,468 - +0.1 5,251,468 - +0.2 5,251,468 - +0.7 5,251,541 + -0.9 5,251,581 - +0.4 5,251,607 + +0.9 5,251,642 + +2.1 5,251,642 + +0.7 5,251,643 - -2.6 5,251,643 - +0.4 5,251,643 - +0.8 5,251,677 - +0.8 5,251,679 + +0.4 5,251,680 - -1.1 5,251,680 - +0.1 5,251,680 - -0.3 5,251,973 + Psyr_4390 0.23 -1.3 5,251,974 - Psyr_4390 0.24 +0.3 5,251,974 - Psyr_4390 0.24 -0.1 5,251,974 - Psyr_4390 0.24 -0.0 5,252,223 - Psyr_4390 0.49 +1.6 5,252,223 - Psyr_4390 0.49 +0.3 5,252,223 - Psyr_4390 0.49 +0.1 5,252,223 - Psyr_4390 0.49 -0.4 5,252,232 + Psyr_4390 0.50 -1.3 5,252,233 - Psyr_4390 0.51 -1.3 5,252,233 - Psyr_4390 0.51 -2.0 5,252,233 - Psyr_4390 0.51 -0.2 5,252,233 - Psyr_4390 0.51 -0.2 5,252,233 - Psyr_4390 0.51 +0.1 5,252,241 - Psyr_4390 0.51 +1.0
Or see this region's nucleotide sequence