Experiment: KB with Harmol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4238 and Psyr_4239 are separated by 74 nucleotides Psyr_4239 and Psyr_4240 are separated by 10 nucleotides Psyr_4240 and Psyr_4241 are separated by 10 nucleotides
Psyr_4238: Psyr_4238 - extracellular solute-binding protein, family 5, at 5,049,950 to 5,051,545
_4238
Psyr_4239: Psyr_4239 - Binding-protein-dependent transport systems inner membrane component, at 5,051,620 to 5,052,630
_4239
Psyr_4240: Psyr_4240 - Binding-protein-dependent transport systems inner membrane component, at 5,052,641 to 5,053,552
_4240
Psyr_4241: Psyr_4241 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 5,053,563 to 5,054,531
_4241
Position (kb) 5051
5052
5053 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5050.628 kb on + strand, within Psyr_4238 at 5050.628 kb on + strand, within Psyr_4238 at 5050.629 kb on - strand, within Psyr_4238 at 5050.814 kb on + strand, within Psyr_4238 at 5050.814 kb on + strand, within Psyr_4238 at 5050.814 kb on + strand, within Psyr_4238 at 5050.815 kb on - strand, within Psyr_4238 at 5050.841 kb on + strand, within Psyr_4238 at 5050.841 kb on + strand, within Psyr_4238 at 5050.842 kb on - strand, within Psyr_4238 at 5050.842 kb on - strand, within Psyr_4238 at 5050.842 kb on - strand, within Psyr_4238 at 5050.898 kb on + strand, within Psyr_4238 at 5050.898 kb on + strand, within Psyr_4238 at 5050.941 kb on + strand, within Psyr_4238 at 5051.040 kb on + strand, within Psyr_4238 at 5051.055 kb on + strand, within Psyr_4238 at 5051.110 kb on - strand, within Psyr_4238 at 5051.157 kb on + strand, within Psyr_4238 at 5051.157 kb on + strand, within Psyr_4238 at 5051.158 kb on - strand, within Psyr_4238 at 5051.158 kb on - strand, within Psyr_4238 at 5051.158 kb on - strand, within Psyr_4238 at 5051.312 kb on + strand, within Psyr_4238 at 5051.312 kb on + strand, within Psyr_4238 at 5051.313 kb on - strand, within Psyr_4238 at 5051.313 kb on - strand, within Psyr_4238 at 5051.313 kb on - strand, within Psyr_4238 at 5051.313 kb on - strand, within Psyr_4238 at 5051.313 kb on - strand, within Psyr_4238 at 5051.313 kb on - strand, within Psyr_4238 at 5051.313 kb on - strand, within Psyr_4238 at 5051.396 kb on + strand at 5051.396 kb on + strand at 5051.396 kb on + strand at 5051.396 kb on + strand at 5051.396 kb on + strand at 5051.397 kb on - strand at 5051.397 kb on - strand at 5051.397 kb on - strand at 5051.397 kb on - strand at 5051.399 kb on - strand at 5051.399 kb on - strand at 5051.495 kb on - strand at 5051.500 kb on - strand at 5051.500 kb on - strand at 5051.516 kb on - strand at 5051.544 kb on - strand at 5051.544 kb on - strand at 5051.544 kb on - strand at 5051.551 kb on + strand at 5051.551 kb on + strand at 5051.568 kb on - strand at 5051.609 kb on + strand at 5051.609 kb on + strand at 5051.610 kb on - strand at 5051.610 kb on - strand at 5051.626 kb on - strand at 5051.626 kb on - strand at 5051.681 kb on + strand at 5051.806 kb on + strand, within Psyr_4239 at 5051.807 kb on - strand, within Psyr_4239 at 5051.807 kb on - strand, within Psyr_4239 at 5051.816 kb on - strand, within Psyr_4239 at 5051.816 kb on - strand, within Psyr_4239 at 5051.816 kb on - strand, within Psyr_4239 at 5051.824 kb on + strand, within Psyr_4239 at 5051.824 kb on + strand, within Psyr_4239 at 5051.825 kb on - strand, within Psyr_4239 at 5052.041 kb on - strand, within Psyr_4239 at 5052.137 kb on - strand, within Psyr_4239 at 5052.137 kb on - strand, within Psyr_4239 at 5052.316 kb on + strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.362 kb on + strand, within Psyr_4239 at 5052.362 kb on + strand, within Psyr_4239 at 5052.592 kb on + strand at 5052.641 kb on - strand at 5052.641 kb on - strand at 5052.641 kb on - strand at 5052.686 kb on + strand at 5053.132 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.217 kb on + strand, within Psyr_4240 at 5053.217 kb on + strand, within Psyr_4240 at 5053.218 kb on - strand, within Psyr_4240 at 5053.424 kb on + strand, within Psyr_4240 at 5053.425 kb on - strand, within Psyr_4240 at 5053.425 kb on - strand, within Psyr_4240
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmol 10 mM remove 5,050,628 + Psyr_4238 0.42 +1.2 5,050,628 + Psyr_4238 0.42 +0.8 5,050,629 - Psyr_4238 0.43 +1.1 5,050,814 + Psyr_4238 0.54 +2.0 5,050,814 + Psyr_4238 0.54 -0.7 5,050,814 + Psyr_4238 0.54 -1.1 5,050,815 - Psyr_4238 0.54 -3.0 5,050,841 + Psyr_4238 0.56 -0.6 5,050,841 + Psyr_4238 0.56 -2.1 5,050,842 - Psyr_4238 0.56 -0.2 5,050,842 - Psyr_4238 0.56 -1.6 5,050,842 - Psyr_4238 0.56 +0.5 5,050,898 + Psyr_4238 0.59 +0.4 5,050,898 + Psyr_4238 0.59 +0.5 5,050,941 + Psyr_4238 0.62 -3.3 5,051,040 + Psyr_4238 0.68 +1.2 5,051,055 + Psyr_4238 0.69 -1.8 5,051,110 - Psyr_4238 0.73 -0.2 5,051,157 + Psyr_4238 0.76 -1.1 5,051,157 + Psyr_4238 0.76 +0.8 5,051,158 - Psyr_4238 0.76 -1.4 5,051,158 - Psyr_4238 0.76 -0.5 5,051,158 - Psyr_4238 0.76 +0.6 5,051,312 + Psyr_4238 0.85 -0.8 5,051,312 + Psyr_4238 0.85 -1.6 5,051,313 - Psyr_4238 0.85 +4.0 5,051,313 - Psyr_4238 0.85 -1.2 5,051,313 - Psyr_4238 0.85 +0.8 5,051,313 - Psyr_4238 0.85 -0.0 5,051,313 - Psyr_4238 0.85 -0.4 5,051,313 - Psyr_4238 0.85 +3.6 5,051,313 - Psyr_4238 0.85 -1.6 5,051,396 + -1.1 5,051,396 + -2.8 5,051,396 + +0.3 5,051,396 + +1.2 5,051,396 + +0.9 5,051,397 - -0.1 5,051,397 - -2.1 5,051,397 - -2.0 5,051,397 - -0.9 5,051,399 - +1.0 5,051,399 - -1.0 5,051,495 - +2.8 5,051,500 - -2.9 5,051,500 - -0.6 5,051,516 - -0.3 5,051,544 - -0.6 5,051,544 - +0.1 5,051,544 - -2.5 5,051,551 + +1.8 5,051,551 + +0.8 5,051,568 - +0.1 5,051,609 + -1.9 5,051,609 + +0.6 5,051,610 - -0.4 5,051,610 - +2.7 5,051,626 - +1.5 5,051,626 - -0.4 5,051,681 + -3.2 5,051,806 + Psyr_4239 0.18 +0.8 5,051,807 - Psyr_4239 0.18 +1.4 5,051,807 - Psyr_4239 0.18 -0.3 5,051,816 - Psyr_4239 0.19 +0.9 5,051,816 - Psyr_4239 0.19 -3.1 5,051,816 - Psyr_4239 0.19 -1.4 5,051,824 + Psyr_4239 0.20 +1.4 5,051,824 + Psyr_4239 0.20 -1.1 5,051,825 - Psyr_4239 0.20 +0.6 5,052,041 - Psyr_4239 0.42 -0.7 5,052,137 - Psyr_4239 0.51 -0.7 5,052,137 - Psyr_4239 0.51 +0.4 5,052,316 + Psyr_4239 0.69 -0.4 5,052,317 - Psyr_4239 0.69 +2.5 5,052,317 - Psyr_4239 0.69 +2.6 5,052,317 - Psyr_4239 0.69 -0.3 5,052,317 - Psyr_4239 0.69 +1.6 5,052,317 - Psyr_4239 0.69 -0.5 5,052,362 + Psyr_4239 0.73 +0.7 5,052,362 + Psyr_4239 0.73 +0.6 5,052,592 + -0.1 5,052,641 - -0.4 5,052,641 - +0.5 5,052,641 - -2.4 5,052,686 + -0.4 5,053,132 + Psyr_4240 0.54 +0.0 5,053,169 + Psyr_4240 0.58 +1.3 5,053,169 + Psyr_4240 0.58 +1.5 5,053,169 + Psyr_4240 0.58 -1.0 5,053,169 + Psyr_4240 0.58 +0.5 5,053,169 + Psyr_4240 0.58 +0.2 5,053,169 + Psyr_4240 0.58 +1.1 5,053,170 - Psyr_4240 0.58 -0.5 5,053,170 - Psyr_4240 0.58 +1.4 5,053,170 - Psyr_4240 0.58 +0.8 5,053,170 - Psyr_4240 0.58 +0.0 5,053,170 - Psyr_4240 0.58 +0.3 5,053,170 - Psyr_4240 0.58 -0.1 5,053,170 - Psyr_4240 0.58 +0.5 5,053,170 - Psyr_4240 0.58 -2.4 5,053,217 + Psyr_4240 0.63 -0.8 5,053,217 + Psyr_4240 0.63 -0.6 5,053,218 - Psyr_4240 0.63 +0.3 5,053,424 + Psyr_4240 0.86 -2.2 5,053,425 - Psyr_4240 0.86 -1.6 5,053,425 - Psyr_4240 0.86 -2.9
Or see this region's nucleotide sequence