Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3331

Experiment: KB with Harmol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3330 and Psyr_3331 are separated by 436 nucleotidesPsyr_3331 and Psyr_3332 overlap by 1 nucleotides Psyr_3330: Psyr_3330 - 4-hydroxyphenylpyruvate dioxygenase, at 3,984,231 to 3,985,307 _3330 Psyr_3331: Psyr_3331 - Glycolate oxidase subunit GlcD, at 3,985,744 to 3,987,243 _3331 Psyr_3332: Psyr_3332 - FAD linked oxidase, N-terminal, at 3,987,243 to 3,988,301 _3332 Position (kb) 3985 3986 3987 3988Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3984.772 kb on + strand, within Psyr_3330at 3984.895 kb on + strand, within Psyr_3330at 3984.895 kb on + strand, within Psyr_3330at 3984.896 kb on - strand, within Psyr_3330at 3984.896 kb on - strand, within Psyr_3330at 3984.932 kb on - strand, within Psyr_3330at 3985.032 kb on - strand, within Psyr_3330at 3985.034 kb on - strand, within Psyr_3330at 3985.102 kb on + strand, within Psyr_3330at 3985.102 kb on + strand, within Psyr_3330at 3985.102 kb on + strand, within Psyr_3330at 3985.102 kb on + strand, within Psyr_3330at 3985.102 kb on + strand, within Psyr_3330at 3985.103 kb on - strand, within Psyr_3330at 3985.103 kb on - strand, within Psyr_3330at 3985.103 kb on - strand, within Psyr_3330at 3985.103 kb on - strand, within Psyr_3330at 3985.116 kb on - strand, within Psyr_3330at 3985.116 kb on - strand, within Psyr_3330at 3985.232 kb on + strandat 3985.233 kb on - strandat 3985.415 kb on - strandat 3985.452 kb on - strandat 3985.577 kb on + strandat 3985.577 kb on + strandat 3985.578 kb on - strandat 3985.595 kb on + strandat 3985.595 kb on + strandat 3985.596 kb on - strandat 3985.600 kb on - strandat 3985.623 kb on - strandat 3985.639 kb on + strandat 3985.640 kb on - strandat 3985.640 kb on - strandat 3985.703 kb on + strandat 3985.704 kb on - strandat 3985.704 kb on - strandat 3985.704 kb on - strandat 3985.704 kb on - strandat 3985.704 kb on - strandat 3985.704 kb on - strandat 3985.725 kb on - strandat 3985.756 kb on + strandat 3985.757 kb on - strandat 3985.874 kb on - strandat 3986.170 kb on + strand, within Psyr_3331at 3986.170 kb on + strand, within Psyr_3331at 3986.171 kb on - strand, within Psyr_3331at 3986.171 kb on - strand, within Psyr_3331at 3986.258 kb on - strand, within Psyr_3331at 3986.404 kb on - strand, within Psyr_3331at 3986.450 kb on + strand, within Psyr_3331at 3986.794 kb on + strand, within Psyr_3331at 3986.795 kb on - strand, within Psyr_3331at 3986.797 kb on + strand, within Psyr_3331at 3986.797 kb on + strand, within Psyr_3331at 3986.797 kb on + strand, within Psyr_3331at 3986.798 kb on - strand, within Psyr_3331at 3986.798 kb on - strand, within Psyr_3331at 3987.376 kb on + strand, within Psyr_3332at 3987.377 kb on - strand, within Psyr_3332at 3987.377 kb on - strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.682 kb on - strand, within Psyr_3332at 3987.877 kb on + strand, within Psyr_3332at 3987.877 kb on + strand, within Psyr_3332at 3987.877 kb on + strand, within Psyr_3332at 3987.877 kb on + strand, within Psyr_3332at 3987.880 kb on + strand, within Psyr_3332at 3987.880 kb on + strand, within Psyr_3332at 3987.880 kb on + strand, within Psyr_3332at 3987.880 kb on + strand, within Psyr_3332at 3987.880 kb on + strand, within Psyr_3332at 3987.881 kb on - strand, within Psyr_3332at 3987.881 kb on - strand, within Psyr_3332at 3987.881 kb on - strand, within Psyr_3332at 3988.030 kb on + strand, within Psyr_3332at 3988.031 kb on - strand, within Psyr_3332at 3988.031 kb on - strand, within Psyr_3332at 3988.131 kb on - strand, within Psyr_3332at 3988.170 kb on + strand, within Psyr_3332

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmol 10 mM
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3,984,772 + Psyr_3330 0.50 +0.5
3,984,895 + Psyr_3330 0.62 -0.5
3,984,895 + Psyr_3330 0.62 -0.3
3,984,896 - Psyr_3330 0.62 +0.3
3,984,896 - Psyr_3330 0.62 +0.5
3,984,932 - Psyr_3330 0.65 -2.1
3,985,032 - Psyr_3330 0.74 -0.5
3,985,034 - Psyr_3330 0.75 +1.9
3,985,102 + Psyr_3330 0.81 -0.8
3,985,102 + Psyr_3330 0.81 +0.9
3,985,102 + Psyr_3330 0.81 -1.4
3,985,102 + Psyr_3330 0.81 -0.5
3,985,102 + Psyr_3330 0.81 +0.4
3,985,103 - Psyr_3330 0.81 +0.6
3,985,103 - Psyr_3330 0.81 +0.3
3,985,103 - Psyr_3330 0.81 +1.8
3,985,103 - Psyr_3330 0.81 +0.3
3,985,116 - Psyr_3330 0.82 +2.0
3,985,116 - Psyr_3330 0.82 -0.9
3,985,232 + +0.1
3,985,233 - +0.2
3,985,415 - +0.3
3,985,452 - -3.0
3,985,577 + +0.0
3,985,577 + -2.5
3,985,578 - +0.3
3,985,595 + -1.4
3,985,595 + +1.2
3,985,596 - -2.4
3,985,600 - +0.6
3,985,623 - +0.4
3,985,639 + -1.0
3,985,640 - -1.7
3,985,640 - -1.6
3,985,703 + -0.8
3,985,704 - +1.3
3,985,704 - +0.4
3,985,704 - +1.3
3,985,704 - +1.0
3,985,704 - -0.6
3,985,704 - -0.0
3,985,725 - -1.1
3,985,756 + -2.3
3,985,757 - -2.7
3,985,874 - -1.4
3,986,170 + Psyr_3331 0.28 -0.1
3,986,170 + Psyr_3331 0.28 +2.5
3,986,171 - Psyr_3331 0.28 +2.1
3,986,171 - Psyr_3331 0.28 -0.9
3,986,258 - Psyr_3331 0.34 -1.3
3,986,404 - Psyr_3331 0.44 +1.3
3,986,450 + Psyr_3331 0.47 -0.7
3,986,794 + Psyr_3331 0.70 -0.2
3,986,795 - Psyr_3331 0.70 -1.3
3,986,797 + Psyr_3331 0.70 +1.9
3,986,797 + Psyr_3331 0.70 +2.9
3,986,797 + Psyr_3331 0.70 -0.7
3,986,798 - Psyr_3331 0.70 +2.1
3,986,798 - Psyr_3331 0.70 -3.5
3,987,376 + Psyr_3332 0.13 +2.9
3,987,377 - Psyr_3332 0.13 +1.6
3,987,377 - Psyr_3332 0.13 +0.3
3,987,411 + Psyr_3332 0.16 -0.1
3,987,411 + Psyr_3332 0.16 +1.0
3,987,411 + Psyr_3332 0.16 -0.1
3,987,411 + Psyr_3332 0.16 +2.0
3,987,411 + Psyr_3332 0.16 +0.8
3,987,411 + Psyr_3332 0.16 -0.9
3,987,412 - Psyr_3332 0.16 -1.2
3,987,682 - Psyr_3332 0.41 +0.2
3,987,877 + Psyr_3332 0.60 +0.3
3,987,877 + Psyr_3332 0.60 +0.6
3,987,877 + Psyr_3332 0.60 +0.8
3,987,877 + Psyr_3332 0.60 +1.2
3,987,880 + Psyr_3332 0.60 -0.7
3,987,880 + Psyr_3332 0.60 -1.0
3,987,880 + Psyr_3332 0.60 +0.1
3,987,880 + Psyr_3332 0.60 -1.0
3,987,880 + Psyr_3332 0.60 +0.9
3,987,881 - Psyr_3332 0.60 -0.3
3,987,881 - Psyr_3332 0.60 -0.6
3,987,881 - Psyr_3332 0.60 +1.2
3,988,030 + Psyr_3332 0.74 -3.1
3,988,031 - Psyr_3332 0.74 +2.9
3,988,031 - Psyr_3332 0.74 -0.7
3,988,131 - Psyr_3332 0.84 -0.1
3,988,170 + Psyr_3332 0.88 -4.2

Or see this region's nucleotide sequence