Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3209

Experiment: KB with Harmol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3208 and Psyr_3209 are separated by 7 nucleotidesPsyr_3209 and Psyr_3210 are separated by 106 nucleotides Psyr_3208: Psyr_3208 - NADH dehydrogenase subunit M, at 3,839,648 to 3,841,180 _3208 Psyr_3209: Psyr_3209 - NADH dehydrogenase subunit N, at 3,841,188 to 3,842,657 _3209 Psyr_3210: Psyr_3210 - Protein of unknown function UPF0118, at 3,842,764 to 3,843,828 _3210 Position (kb) 3841 3842 3843Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3840.315 kb on - strand, within Psyr_3208at 3840.315 kb on - strand, within Psyr_3208at 3840.644 kb on + strand, within Psyr_3208at 3840.943 kb on - strand, within Psyr_3208at 3841.084 kb on - strandat 3841.437 kb on - strand, within Psyr_3209at 3841.674 kb on + strand, within Psyr_3209at 3841.674 kb on + strand, within Psyr_3209at 3842.015 kb on - strand, within Psyr_3209at 3842.190 kb on + strand, within Psyr_3209at 3842.349 kb on - strand, within Psyr_3209at 3842.383 kb on - strand, within Psyr_3209at 3842.490 kb on + strand, within Psyr_3209at 3842.491 kb on - strand, within Psyr_3209at 3842.647 kb on + strandat 3842.647 kb on + strandat 3842.647 kb on + strandat 3842.896 kb on - strand, within Psyr_3210at 3843.032 kb on + strand, within Psyr_3210at 3843.032 kb on + strand, within Psyr_3210at 3843.033 kb on - strand, within Psyr_3210at 3843.033 kb on - strand, within Psyr_3210at 3843.033 kb on - strand, within Psyr_3210at 3843.205 kb on + strand, within Psyr_3210at 3843.205 kb on + strand, within Psyr_3210at 3843.206 kb on - strand, within Psyr_3210at 3843.311 kb on + strand, within Psyr_3210at 3843.311 kb on + strand, within Psyr_3210at 3843.312 kb on - strand, within Psyr_3210at 3843.312 kb on - strand, within Psyr_3210at 3843.312 kb on - strand, within Psyr_3210at 3843.312 kb on - strand, within Psyr_3210at 3843.312 kb on - strand, within Psyr_3210at 3843.393 kb on - strand, within Psyr_3210at 3843.554 kb on + strand, within Psyr_3210at 3843.555 kb on - strand, within Psyr_3210

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmol 10 mM
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3,840,315 - Psyr_3208 0.44 -3.5
3,840,315 - Psyr_3208 0.44 -1.8
3,840,644 + Psyr_3208 0.65 +1.3
3,840,943 - Psyr_3208 0.84 +1.9
3,841,084 - +1.3
3,841,437 - Psyr_3209 0.17 -3.4
3,841,674 + Psyr_3209 0.33 +1.3
3,841,674 + Psyr_3209 0.33 -1.4
3,842,015 - Psyr_3209 0.56 -3.5
3,842,190 + Psyr_3209 0.68 -0.8
3,842,349 - Psyr_3209 0.79 +1.3
3,842,383 - Psyr_3209 0.81 +1.3
3,842,490 + Psyr_3209 0.89 +0.3
3,842,491 - Psyr_3209 0.89 +0.0
3,842,647 + +2.9
3,842,647 + +3.3
3,842,647 + -0.0
3,842,896 - Psyr_3210 0.12 -0.3
3,843,032 + Psyr_3210 0.25 -1.2
3,843,032 + Psyr_3210 0.25 -0.3
3,843,033 - Psyr_3210 0.25 -1.7
3,843,033 - Psyr_3210 0.25 +0.3
3,843,033 - Psyr_3210 0.25 +0.3
3,843,205 + Psyr_3210 0.41 +0.1
3,843,205 + Psyr_3210 0.41 -1.2
3,843,206 - Psyr_3210 0.42 -2.2
3,843,311 + Psyr_3210 0.51 -1.4
3,843,311 + Psyr_3210 0.51 +1.1
3,843,312 - Psyr_3210 0.51 -0.4
3,843,312 - Psyr_3210 0.51 +1.5
3,843,312 - Psyr_3210 0.51 +4.7
3,843,312 - Psyr_3210 0.51 +2.6
3,843,312 - Psyr_3210 0.51 +1.6
3,843,393 - Psyr_3210 0.59 -1.2
3,843,554 + Psyr_3210 0.74 +0.3
3,843,555 - Psyr_3210 0.74 -0.4

Or see this region's nucleotide sequence