Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3025

Experiment: KB with Harmol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3024 and Psyr_3025 are separated by 36 nucleotidesPsyr_3025 and Psyr_3026 are separated by 106 nucleotidesPsyr_3026 and Psyr_3027 are separated by 78 nucleotides Psyr_3024: Psyr_3024 - Peptidase M14, carboxypeptidase A, at 3,621,563 to 3,622,699 _3024 Psyr_3025: Psyr_3025 - Major facilitator superfamily, at 3,622,736 to 3,623,965 _3025 Psyr_3026: Psyr_3026 - transcriptional regulator, TetR family, at 3,624,072 to 3,624,617 _3026 Psyr_3027: Psyr_3027 - Protein kinase:Leucine-rich repeat protein, at 3,624,696 to 3,626,000 _3027 Position (kb) 3622 3623 3624Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3621.780 kb on - strand, within Psyr_3024at 3621.906 kb on - strand, within Psyr_3024at 3622.001 kb on - strand, within Psyr_3024at 3622.173 kb on - strand, within Psyr_3024at 3622.367 kb on + strand, within Psyr_3024at 3622.371 kb on + strand, within Psyr_3024at 3622.371 kb on + strand, within Psyr_3024at 3622.372 kb on - strand, within Psyr_3024at 3622.372 kb on - strand, within Psyr_3024at 3622.372 kb on - strand, within Psyr_3024at 3622.372 kb on - strand, within Psyr_3024at 3622.403 kb on + strand, within Psyr_3024at 3622.550 kb on + strand, within Psyr_3024at 3622.551 kb on - strand, within Psyr_3024at 3622.659 kb on + strandat 3622.659 kb on + strandat 3622.659 kb on + strandat 3622.659 kb on + strandat 3622.659 kb on + strandat 3622.659 kb on + strandat 3622.659 kb on + strandat 3622.660 kb on - strandat 3622.660 kb on - strandat 3622.660 kb on - strandat 3622.660 kb on - strandat 3622.660 kb on - strandat 3622.683 kb on + strandat 3622.683 kb on + strandat 3622.684 kb on - strandat 3622.738 kb on - strandat 3622.906 kb on - strand, within Psyr_3025at 3622.906 kb on - strand, within Psyr_3025at 3623.165 kb on + strand, within Psyr_3025at 3623.165 kb on + strand, within Psyr_3025at 3623.303 kb on + strand, within Psyr_3025at 3623.303 kb on + strand, within Psyr_3025at 3623.303 kb on + strand, within Psyr_3025at 3623.304 kb on - strand, within Psyr_3025at 3623.304 kb on - strand, within Psyr_3025at 3623.400 kb on + strand, within Psyr_3025at 3623.524 kb on + strand, within Psyr_3025at 3623.524 kb on + strand, within Psyr_3025at 3623.524 kb on + strand, within Psyr_3025at 3623.525 kb on - strand, within Psyr_3025at 3623.525 kb on - strand, within Psyr_3025at 3623.721 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.773 kb on - strand, within Psyr_3025at 3623.773 kb on - strand, within Psyr_3025at 3623.773 kb on - strand, within Psyr_3025at 3623.773 kb on - strand, within Psyr_3025at 3623.773 kb on - strand, within Psyr_3025at 3623.774 kb on + strand, within Psyr_3025at 3623.775 kb on - strand, within Psyr_3025at 3623.775 kb on - strand, within Psyr_3025at 3623.775 kb on - strand, within Psyr_3025at 3623.827 kb on - strand, within Psyr_3025at 3623.835 kb on + strand, within Psyr_3025at 3623.836 kb on - strand, within Psyr_3025at 3623.873 kb on + strandat 3623.970 kb on - strandat 3624.225 kb on - strand, within Psyr_3026at 3624.225 kb on - strand, within Psyr_3026at 3624.225 kb on - strand, within Psyr_3026at 3624.349 kb on - strand, within Psyr_3026at 3624.349 kb on - strand, within Psyr_3026at 3624.349 kb on - strand, within Psyr_3026at 3624.691 kb on + strandat 3624.691 kb on + strandat 3624.691 kb on + strandat 3624.691 kb on + strandat 3624.692 kb on - strandat 3624.692 kb on - strandat 3624.715 kb on + strandat 3624.716 kb on - strandat 3624.909 kb on - strand, within Psyr_3027

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmol 10 mM
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3,621,780 - Psyr_3024 0.19 +0.4
3,621,906 - Psyr_3024 0.30 +0.4
3,622,001 - Psyr_3024 0.39 -0.5
3,622,173 - Psyr_3024 0.54 -1.5
3,622,367 + Psyr_3024 0.71 -0.8
3,622,371 + Psyr_3024 0.71 +0.3
3,622,371 + Psyr_3024 0.71 +1.0
3,622,372 - Psyr_3024 0.71 -0.8
3,622,372 - Psyr_3024 0.71 +0.4
3,622,372 - Psyr_3024 0.71 +1.4
3,622,372 - Psyr_3024 0.71 -0.6
3,622,403 + Psyr_3024 0.74 -1.6
3,622,550 + Psyr_3024 0.87 -0.9
3,622,551 - Psyr_3024 0.87 +0.0
3,622,659 + +1.2
3,622,659 + -0.1
3,622,659 + +3.3
3,622,659 + -0.6
3,622,659 + +2.4
3,622,659 + +0.5
3,622,659 + +3.0
3,622,660 - +1.9
3,622,660 - +0.3
3,622,660 - -0.4
3,622,660 - +0.1
3,622,660 - -0.1
3,622,683 + -2.2
3,622,683 + +1.2
3,622,684 - +0.7
3,622,738 - +0.2
3,622,906 - Psyr_3025 0.14 -0.8
3,622,906 - Psyr_3025 0.14 +0.3
3,623,165 + Psyr_3025 0.35 -1.6
3,623,165 + Psyr_3025 0.35 +0.6
3,623,303 + Psyr_3025 0.46 -1.5
3,623,303 + Psyr_3025 0.46 -0.3
3,623,303 + Psyr_3025 0.46 -0.1
3,623,304 - Psyr_3025 0.46 +0.2
3,623,304 - Psyr_3025 0.46 +3.0
3,623,400 + Psyr_3025 0.54 -0.1
3,623,524 + Psyr_3025 0.64 -2.8
3,623,524 + Psyr_3025 0.64 +1.4
3,623,524 + Psyr_3025 0.64 -1.6
3,623,525 - Psyr_3025 0.64 +0.5
3,623,525 - Psyr_3025 0.64 +1.2
3,623,721 + Psyr_3025 0.80 +0.1
3,623,772 + Psyr_3025 0.84 -0.1
3,623,772 + Psyr_3025 0.84 +1.4
3,623,772 + Psyr_3025 0.84 +0.1
3,623,773 - Psyr_3025 0.84 +0.8
3,623,773 - Psyr_3025 0.84 +0.4
3,623,773 - Psyr_3025 0.84 +1.8
3,623,773 - Psyr_3025 0.84 +0.4
3,623,773 - Psyr_3025 0.84 -1.3
3,623,774 + Psyr_3025 0.84 -0.6
3,623,775 - Psyr_3025 0.84 -2.3
3,623,775 - Psyr_3025 0.84 -0.8
3,623,775 - Psyr_3025 0.84 +0.5
3,623,827 - Psyr_3025 0.89 +0.6
3,623,835 + Psyr_3025 0.89 +1.4
3,623,836 - Psyr_3025 0.89 +0.4
3,623,873 + +0.2
3,623,970 - +0.7
3,624,225 - Psyr_3026 0.28 +3.4
3,624,225 - Psyr_3026 0.28 +0.4
3,624,225 - Psyr_3026 0.28 +2.3
3,624,349 - Psyr_3026 0.51 -3.2
3,624,349 - Psyr_3026 0.51 +0.3
3,624,349 - Psyr_3026 0.51 -0.8
3,624,691 + -0.6
3,624,691 + +2.2
3,624,691 + -0.8
3,624,691 + +0.1
3,624,692 - -2.1
3,624,692 - +1.4
3,624,715 + -1.1
3,624,716 - -1.1
3,624,909 - Psyr_3027 0.16 -1.6

Or see this region's nucleotide sequence