Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2607

Experiment: KB with Harmol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2606 and Psyr_2607 overlap by 22 nucleotidesPsyr_2607 and Psyr_2608 are separated by 224 nucleotides Psyr_2606: Psyr_2606 - RND efflux system, outer membrane lipoprotein, NodT, at 3,060,225 to 3,061,661 _2606 Psyr_2607: Psyr_2607 - regulatory protein, LuxR, at 3,061,640 to 3,062,470 _2607 Psyr_2608: Psyr_2608 - Amino acid adenylation, at 3,062,695 to 3,091,191 _2608 Position (kb) 3061 3062 3063Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3060.681 kb on - strand, within Psyr_2606at 3060.681 kb on - strand, within Psyr_2606at 3061.137 kb on + strand, within Psyr_2606at 3061.137 kb on + strand, within Psyr_2606at 3061.138 kb on - strand, within Psyr_2606at 3061.171 kb on + strand, within Psyr_2606at 3061.171 kb on + strand, within Psyr_2606at 3061.171 kb on + strand, within Psyr_2606at 3061.171 kb on + strand, within Psyr_2606at 3061.172 kb on - strand, within Psyr_2606at 3061.172 kb on - strand, within Psyr_2606at 3061.172 kb on - strand, within Psyr_2606at 3061.203 kb on + strand, within Psyr_2606at 3061.256 kb on - strand, within Psyr_2606at 3061.260 kb on - strand, within Psyr_2606at 3061.260 kb on - strand, within Psyr_2606at 3061.369 kb on + strand, within Psyr_2606at 3061.522 kb on + strandat 3061.573 kb on + strandat 3061.573 kb on + strandat 3061.716 kb on + strandat 3061.717 kb on - strandat 3061.866 kb on + strand, within Psyr_2607at 3061.867 kb on - strand, within Psyr_2607at 3061.872 kb on + strand, within Psyr_2607at 3061.872 kb on + strand, within Psyr_2607at 3061.873 kb on - strand, within Psyr_2607at 3061.938 kb on - strand, within Psyr_2607at 3061.983 kb on + strand, within Psyr_2607at 3061.984 kb on - strand, within Psyr_2607at 3062.277 kb on - strand, within Psyr_2607at 3062.277 kb on - strand, within Psyr_2607at 3062.336 kb on + strand, within Psyr_2607at 3062.350 kb on + strand, within Psyr_2607at 3062.350 kb on + strand, within Psyr_2607at 3062.350 kb on + strand, within Psyr_2607at 3062.351 kb on - strand, within Psyr_2607at 3062.351 kb on - strand, within Psyr_2607at 3062.357 kb on + strand, within Psyr_2607at 3062.358 kb on - strand, within Psyr_2607at 3062.358 kb on - strand, within Psyr_2607at 3062.365 kb on - strand, within Psyr_2607at 3062.425 kb on - strandat 3062.470 kb on + strandat 3062.470 kb on + strandat 3062.470 kb on + strandat 3062.471 kb on - strandat 3062.471 kb on - strandat 3062.471 kb on - strandat 3062.471 kb on - strandat 3062.471 kb on - strandat 3062.630 kb on - strandat 3062.696 kb on + strandat 3062.931 kb on + strandat 3062.931 kb on + strandat 3062.931 kb on + strandat 3062.931 kb on + strandat 3062.932 kb on - strandat 3062.954 kb on + strandat 3062.954 kb on + strandat 3062.954 kb on + strandat 3062.954 kb on + strandat 3062.954 kb on + strandat 3062.954 kb on + strandat 3062.954 kb on + strandat 3062.954 kb on + strandat 3062.955 kb on - strandat 3062.955 kb on - strandat 3062.955 kb on - strandat 3062.955 kb on - strandat 3062.955 kb on - strandat 3062.955 kb on - strandat 3063.004 kb on + strandat 3063.121 kb on + strandat 3063.122 kb on - strandat 3063.332 kb on - strandat 3063.425 kb on + strandat 3063.426 kb on - strandat 3063.470 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmol 10 mM
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3,060,681 - Psyr_2606 0.32 +0.3
3,060,681 - Psyr_2606 0.32 +0.6
3,061,137 + Psyr_2606 0.63 +1.6
3,061,137 + Psyr_2606 0.63 +0.8
3,061,138 - Psyr_2606 0.64 +1.1
3,061,171 + Psyr_2606 0.66 +0.9
3,061,171 + Psyr_2606 0.66 +3.2
3,061,171 + Psyr_2606 0.66 +0.6
3,061,171 + Psyr_2606 0.66 +2.6
3,061,172 - Psyr_2606 0.66 +1.6
3,061,172 - Psyr_2606 0.66 +1.1
3,061,172 - Psyr_2606 0.66 -1.9
3,061,203 + Psyr_2606 0.68 -0.5
3,061,256 - Psyr_2606 0.72 +2.0
3,061,260 - Psyr_2606 0.72 +2.7
3,061,260 - Psyr_2606 0.72 +1.6
3,061,369 + Psyr_2606 0.80 +0.8
3,061,522 + +1.4
3,061,573 + -1.7
3,061,573 + +1.8
3,061,716 + -1.1
3,061,717 - +0.6
3,061,866 + Psyr_2607 0.27 +2.6
3,061,867 - Psyr_2607 0.27 -1.2
3,061,872 + Psyr_2607 0.28 +1.8
3,061,872 + Psyr_2607 0.28 -1.1
3,061,873 - Psyr_2607 0.28 -0.5
3,061,938 - Psyr_2607 0.36 +0.6
3,061,983 + Psyr_2607 0.41 -0.1
3,061,984 - Psyr_2607 0.41 -0.0
3,062,277 - Psyr_2607 0.77 -2.2
3,062,277 - Psyr_2607 0.77 -0.6
3,062,336 + Psyr_2607 0.84 +0.6
3,062,350 + Psyr_2607 0.85 -0.0
3,062,350 + Psyr_2607 0.85 +0.6
3,062,350 + Psyr_2607 0.85 -0.5
3,062,351 - Psyr_2607 0.86 -0.0
3,062,351 - Psyr_2607 0.86 -3.7
3,062,357 + Psyr_2607 0.86 +0.4
3,062,358 - Psyr_2607 0.86 +0.8
3,062,358 - Psyr_2607 0.86 -1.3
3,062,365 - Psyr_2607 0.87 +2.6
3,062,425 - +1.3
3,062,470 + +1.5
3,062,470 + +1.2
3,062,470 + +0.2
3,062,471 - +0.3
3,062,471 - +2.6
3,062,471 - +0.7
3,062,471 - -0.6
3,062,471 - -1.0
3,062,630 - -0.1
3,062,696 + -1.1
3,062,931 + -0.0
3,062,931 + -0.5
3,062,931 + -0.0
3,062,931 + -2.6
3,062,932 - +0.6
3,062,954 + +0.3
3,062,954 + -0.9
3,062,954 + +0.4
3,062,954 + -0.2
3,062,954 + -0.4
3,062,954 + +0.3
3,062,954 + -1.3
3,062,954 + -1.0
3,062,955 - -0.0
3,062,955 - +1.8
3,062,955 - +3.0
3,062,955 - -0.4
3,062,955 - -0.7
3,062,955 - -0.9
3,063,004 + -3.0
3,063,121 + +0.7
3,063,122 - +1.6
3,063,332 - +1.9
3,063,425 + +1.6
3,063,426 - +0.9
3,063,470 + -1.4

Or see this region's nucleotide sequence