Experiment: KB with Harmol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2606 and Psyr_2607 overlap by 22 nucleotides Psyr_2607 and Psyr_2608 are separated by 224 nucleotides
Psyr_2606: Psyr_2606 - RND efflux system, outer membrane lipoprotein, NodT, at 3,060,225 to 3,061,661
_2606
Psyr_2607: Psyr_2607 - regulatory protein, LuxR, at 3,061,640 to 3,062,470
_2607
Psyr_2608: Psyr_2608 - Amino acid adenylation, at 3,062,695 to 3,091,191
_2608
Position (kb)
3061
3062
3063 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3060.681 kb on - strand, within Psyr_2606 at 3060.681 kb on - strand, within Psyr_2606 at 3061.137 kb on + strand, within Psyr_2606 at 3061.137 kb on + strand, within Psyr_2606 at 3061.138 kb on - strand, within Psyr_2606 at 3061.171 kb on + strand, within Psyr_2606 at 3061.171 kb on + strand, within Psyr_2606 at 3061.171 kb on + strand, within Psyr_2606 at 3061.171 kb on + strand, within Psyr_2606 at 3061.172 kb on - strand, within Psyr_2606 at 3061.172 kb on - strand, within Psyr_2606 at 3061.172 kb on - strand, within Psyr_2606 at 3061.203 kb on + strand, within Psyr_2606 at 3061.256 kb on - strand, within Psyr_2606 at 3061.260 kb on - strand, within Psyr_2606 at 3061.260 kb on - strand, within Psyr_2606 at 3061.369 kb on + strand, within Psyr_2606 at 3061.522 kb on + strand at 3061.573 kb on + strand at 3061.573 kb on + strand at 3061.716 kb on + strand at 3061.717 kb on - strand at 3061.866 kb on + strand, within Psyr_2607 at 3061.867 kb on - strand, within Psyr_2607 at 3061.872 kb on + strand, within Psyr_2607 at 3061.872 kb on + strand, within Psyr_2607 at 3061.873 kb on - strand, within Psyr_2607 at 3061.938 kb on - strand, within Psyr_2607 at 3061.983 kb on + strand, within Psyr_2607 at 3061.984 kb on - strand, within Psyr_2607 at 3062.277 kb on - strand, within Psyr_2607 at 3062.277 kb on - strand, within Psyr_2607 at 3062.336 kb on + strand, within Psyr_2607 at 3062.350 kb on + strand, within Psyr_2607 at 3062.350 kb on + strand, within Psyr_2607 at 3062.350 kb on + strand, within Psyr_2607 at 3062.351 kb on - strand, within Psyr_2607 at 3062.351 kb on - strand, within Psyr_2607 at 3062.357 kb on + strand, within Psyr_2607 at 3062.358 kb on - strand, within Psyr_2607 at 3062.358 kb on - strand, within Psyr_2607 at 3062.365 kb on - strand, within Psyr_2607 at 3062.425 kb on - strand at 3062.470 kb on + strand at 3062.470 kb on + strand at 3062.470 kb on + strand at 3062.471 kb on - strand at 3062.471 kb on - strand at 3062.471 kb on - strand at 3062.471 kb on - strand at 3062.471 kb on - strand at 3062.630 kb on - strand at 3062.696 kb on + strand at 3062.931 kb on + strand at 3062.931 kb on + strand at 3062.931 kb on + strand at 3062.931 kb on + strand at 3062.932 kb on - strand at 3062.954 kb on + strand at 3062.954 kb on + strand at 3062.954 kb on + strand at 3062.954 kb on + strand at 3062.954 kb on + strand at 3062.954 kb on + strand at 3062.954 kb on + strand at 3062.954 kb on + strand at 3062.955 kb on - strand at 3062.955 kb on - strand at 3062.955 kb on - strand at 3062.955 kb on - strand at 3062.955 kb on - strand at 3062.955 kb on - strand at 3063.004 kb on + strand at 3063.121 kb on + strand at 3063.122 kb on - strand at 3063.332 kb on - strand at 3063.425 kb on + strand at 3063.426 kb on - strand at 3063.470 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmol 10 mM remove 3,060,681 - Psyr_2606 0.32 +0.3 3,060,681 - Psyr_2606 0.32 +0.6 3,061,137 + Psyr_2606 0.63 +1.6 3,061,137 + Psyr_2606 0.63 +0.8 3,061,138 - Psyr_2606 0.64 +1.1 3,061,171 + Psyr_2606 0.66 +0.9 3,061,171 + Psyr_2606 0.66 +3.2 3,061,171 + Psyr_2606 0.66 +0.6 3,061,171 + Psyr_2606 0.66 +2.6 3,061,172 - Psyr_2606 0.66 +1.6 3,061,172 - Psyr_2606 0.66 +1.1 3,061,172 - Psyr_2606 0.66 -1.9 3,061,203 + Psyr_2606 0.68 -0.5 3,061,256 - Psyr_2606 0.72 +2.0 3,061,260 - Psyr_2606 0.72 +2.7 3,061,260 - Psyr_2606 0.72 +1.6 3,061,369 + Psyr_2606 0.80 +0.8 3,061,522 + +1.4 3,061,573 + -1.7 3,061,573 + +1.8 3,061,716 + -1.1 3,061,717 - +0.6 3,061,866 + Psyr_2607 0.27 +2.6 3,061,867 - Psyr_2607 0.27 -1.2 3,061,872 + Psyr_2607 0.28 +1.8 3,061,872 + Psyr_2607 0.28 -1.1 3,061,873 - Psyr_2607 0.28 -0.5 3,061,938 - Psyr_2607 0.36 +0.6 3,061,983 + Psyr_2607 0.41 -0.1 3,061,984 - Psyr_2607 0.41 -0.0 3,062,277 - Psyr_2607 0.77 -2.2 3,062,277 - Psyr_2607 0.77 -0.6 3,062,336 + Psyr_2607 0.84 +0.6 3,062,350 + Psyr_2607 0.85 -0.0 3,062,350 + Psyr_2607 0.85 +0.6 3,062,350 + Psyr_2607 0.85 -0.5 3,062,351 - Psyr_2607 0.86 -0.0 3,062,351 - Psyr_2607 0.86 -3.7 3,062,357 + Psyr_2607 0.86 +0.4 3,062,358 - Psyr_2607 0.86 +0.8 3,062,358 - Psyr_2607 0.86 -1.3 3,062,365 - Psyr_2607 0.87 +2.6 3,062,425 - +1.3 3,062,470 + +1.5 3,062,470 + +1.2 3,062,470 + +0.2 3,062,471 - +0.3 3,062,471 - +2.6 3,062,471 - +0.7 3,062,471 - -0.6 3,062,471 - -1.0 3,062,630 - -0.1 3,062,696 + -1.1 3,062,931 + -0.0 3,062,931 + -0.5 3,062,931 + -0.0 3,062,931 + -2.6 3,062,932 - +0.6 3,062,954 + +0.3 3,062,954 + -0.9 3,062,954 + +0.4 3,062,954 + -0.2 3,062,954 + -0.4 3,062,954 + +0.3 3,062,954 + -1.3 3,062,954 + -1.0 3,062,955 - -0.0 3,062,955 - +1.8 3,062,955 - +3.0 3,062,955 - -0.4 3,062,955 - -0.7 3,062,955 - -0.9 3,063,004 + -3.0 3,063,121 + +0.7 3,063,122 - +1.6 3,063,332 - +1.9 3,063,425 + +1.6 3,063,426 - +0.9 3,063,470 + -1.4
Or see this region's nucleotide sequence