Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21340 and PS417_21345 are separated by 269 nucleotides PS417_21345 and PS417_21350 are separated by 190 nucleotides PS417_21350 and PS417_21355 are separated by 51 nucleotides PS417_21355 and PS417_21360 are separated by 51 nucleotides
PS417_21340: PS417_21340 - short-chain dehydrogenase, at 4,638,427 to 4,639,248
_21340
PS417_21345: PS417_21345 - GNAT family acetyltransferase, at 4,639,518 to 4,639,997
_21345
PS417_21350: PS417_21350 - hypothetical protein, at 4,640,188 to 4,640,520
_21350
PS417_21355: PS417_21355 - hypothetical protein, at 4,640,572 to 4,640,838
_21355
PS417_21360: PS417_21360 - termination factor Rho, at 4,640,890 to 4,641,270
_21360
Position (kb) 4639
4640 Strain fitness (log2 ratio) -2
-1
0
1 at 4638.642 kb on - strand, within PS417_21340 at 4638.943 kb on + strand, within PS417_21340 at 4638.944 kb on - strand, within PS417_21340 at 4638.944 kb on - strand, within PS417_21340 at 4638.944 kb on - strand, within PS417_21340 at 4638.944 kb on - strand, within PS417_21340 at 4638.944 kb on - strand, within PS417_21340 at 4639.028 kb on + strand, within PS417_21340 at 4639.029 kb on - strand, within PS417_21340 at 4639.202 kb on + strand at 4639.202 kb on + strand at 4639.203 kb on - strand at 4639.295 kb on + strand at 4639.298 kb on - strand at 4639.298 kb on - strand at 4639.324 kb on - strand at 4639.327 kb on + strand at 4639.345 kb on - strand at 4639.366 kb on - strand at 4639.737 kb on - strand, within PS417_21345 at 4639.738 kb on + strand, within PS417_21345 at 4639.738 kb on + strand, within PS417_21345 at 4639.738 kb on + strand, within PS417_21345 at 4639.784 kb on - strand, within PS417_21345 at 4639.922 kb on - strand, within PS417_21345 at 4640.028 kb on + strand at 4640.028 kb on + strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.031 kb on + strand at 4640.031 kb on + strand at 4640.031 kb on + strand at 4640.031 kb on + strand at 4640.151 kb on + strand at 4640.154 kb on + strand at 4640.154 kb on + strand at 4640.155 kb on - strand at 4640.155 kb on - strand at 4640.158 kb on + strand at 4640.159 kb on - strand at 4640.167 kb on + strand at 4640.174 kb on - strand at 4640.567 kb on + strand at 4640.662 kb on + strand, within PS417_21355 at 4640.758 kb on + strand, within PS417_21355 at 4640.836 kb on + strand at 4640.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x remove 4,638,642 - PS417_21340 0.26 +0.6 4,638,943 + PS417_21340 0.63 +0.2 4,638,944 - PS417_21340 0.63 -0.0 4,638,944 - PS417_21340 0.63 +1.0 4,638,944 - PS417_21340 0.63 -2.5 4,638,944 - PS417_21340 0.63 +0.2 4,638,944 - PS417_21340 0.63 +0.5 4,639,028 + PS417_21340 0.73 -0.0 4,639,029 - PS417_21340 0.73 -0.2 4,639,202 + -0.2 4,639,202 + -0.5 4,639,203 - +0.3 4,639,295 + -0.4 4,639,298 - -0.2 4,639,298 - -0.4 4,639,324 - +0.5 4,639,327 + -0.1 4,639,345 - +0.9 4,639,366 - -0.1 4,639,737 - PS417_21345 0.46 -1.6 4,639,738 + PS417_21345 0.46 -0.5 4,639,738 + PS417_21345 0.46 +0.0 4,639,738 + PS417_21345 0.46 +0.0 4,639,784 - PS417_21345 0.55 -0.5 4,639,922 - PS417_21345 0.84 -0.9 4,640,028 + -0.0 4,640,028 + +1.6 4,640,029 - -0.2 4,640,029 - -0.2 4,640,029 - +0.6 4,640,029 - -0.2 4,640,029 - +1.2 4,640,029 - +0.4 4,640,029 - +0.0 4,640,029 - +0.7 4,640,029 - -0.3 4,640,029 - -0.0 4,640,031 + -0.9 4,640,031 + +0.8 4,640,031 + +0.1 4,640,031 + -0.1 4,640,151 + +0.6 4,640,154 + +0.0 4,640,154 + -0.2 4,640,155 - -0.3 4,640,155 - -0.1 4,640,158 + -0.2 4,640,159 - +0.3 4,640,167 + -0.2 4,640,174 - -0.2 4,640,567 + +0.5 4,640,662 + PS417_21355 0.34 -2.0 4,640,758 + PS417_21355 0.70 +0.4 4,640,836 + +0.6 4,640,915 - -0.7
Or see this region's nucleotide sequence