Experiment: KB with Auraptene 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5049 and Psyr_5050 are separated by 50 nucleotides Psyr_5050 and Psyr_5051 are separated by 267 nucleotides
Psyr_5049: Psyr_5049 - conserved hypothetical protein, at 5,990,200 to 5,990,814
_5049
Psyr_5050: Psyr_5050 - transcriptional regulator, LysR family, at 5,990,865 to 5,991,812
_5050
Psyr_5051: Psyr_5051 - Aspartate ammonia-lyase, at 5,992,080 to 5,993,504
_5051
Position (kb) 5990
5991
5992 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5989.918 kb on - strand at 5989.918 kb on - strand at 5989.924 kb on - strand at 5989.958 kb on - strand at 5989.958 kb on - strand at 5989.958 kb on - strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.130 kb on - strand at 5990.130 kb on - strand at 5990.166 kb on - strand at 5990.166 kb on - strand at 5990.169 kb on + strand at 5990.196 kb on - strand at 5990.196 kb on - strand at 5990.310 kb on + strand, within Psyr_5049 at 5990.310 kb on + strand, within Psyr_5049 at 5990.310 kb on + strand, within Psyr_5049 at 5990.311 kb on - strand, within Psyr_5049 at 5990.344 kb on + strand, within Psyr_5049 at 5990.344 kb on + strand, within Psyr_5049 at 5990.344 kb on + strand, within Psyr_5049 at 5990.344 kb on + strand, within Psyr_5049 at 5990.344 kb on + strand, within Psyr_5049 at 5990.345 kb on - strand, within Psyr_5049 at 5990.345 kb on - strand, within Psyr_5049 at 5990.345 kb on - strand, within Psyr_5049 at 5990.345 kb on - strand, within Psyr_5049 at 5990.345 kb on - strand, within Psyr_5049 at 5990.345 kb on - strand, within Psyr_5049 at 5990.471 kb on - strand, within Psyr_5049 at 5990.498 kb on - strand, within Psyr_5049 at 5990.538 kb on + strand, within Psyr_5049 at 5990.538 kb on + strand, within Psyr_5049 at 5990.538 kb on + strand, within Psyr_5049 at 5990.539 kb on - strand, within Psyr_5049 at 5990.539 kb on - strand, within Psyr_5049 at 5990.539 kb on - strand, within Psyr_5049 at 5990.539 kb on - strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.542 kb on + strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.543 kb on - strand, within Psyr_5049 at 5990.562 kb on + strand, within Psyr_5049 at 5990.563 kb on - strand, within Psyr_5049 at 5990.579 kb on + strand, within Psyr_5049 at 5990.579 kb on + strand, within Psyr_5049 at 5990.579 kb on + strand, within Psyr_5049 at 5990.579 kb on + strand, within Psyr_5049 at 5990.580 kb on - strand, within Psyr_5049 at 5990.580 kb on - strand, within Psyr_5049 at 5990.633 kb on - strand, within Psyr_5049 at 5990.633 kb on - strand, within Psyr_5049 at 5990.730 kb on + strand, within Psyr_5049 at 5990.730 kb on + strand, within Psyr_5049 at 5990.730 kb on + strand, within Psyr_5049 at 5990.730 kb on + strand, within Psyr_5049 at 5990.730 kb on + strand, within Psyr_5049 at 5990.731 kb on - strand, within Psyr_5049 at 5990.731 kb on - strand, within Psyr_5049 at 5990.731 kb on - strand, within Psyr_5049 at 5990.731 kb on - strand, within Psyr_5049 at 5990.749 kb on + strand, within Psyr_5049 at 5990.749 kb on + strand, within Psyr_5049 at 5990.749 kb on + strand, within Psyr_5049 at 5990.749 kb on + strand, within Psyr_5049 at 5990.750 kb on - strand, within Psyr_5049 at 5990.750 kb on - strand, within Psyr_5049 at 5990.750 kb on - strand, within Psyr_5049 at 5990.750 kb on - strand, within Psyr_5049 at 5990.750 kb on - strand, within Psyr_5049 at 5990.752 kb on + strand, within Psyr_5049 at 5990.752 kb on + strand, within Psyr_5049 at 5990.752 kb on + strand, within Psyr_5049 at 5990.752 kb on + strand, within Psyr_5049 at 5990.752 kb on + strand, within Psyr_5049 at 5990.752 kb on + strand, within Psyr_5049 at 5990.753 kb on - strand at 5990.753 kb on - strand at 5990.753 kb on - strand at 5990.753 kb on - strand at 5990.753 kb on - strand at 5990.753 kb on - strand at 5990.788 kb on + strand at 5990.789 kb on - strand at 5990.789 kb on - strand at 5990.831 kb on + strand at 5990.832 kb on - strand at 5990.832 kb on - strand at 5991.091 kb on + strand, within Psyr_5050 at 5991.092 kb on - strand, within Psyr_5050 at 5991.092 kb on - strand, within Psyr_5050 at 5991.316 kb on + strand, within Psyr_5050 at 5991.316 kb on + strand, within Psyr_5050 at 5991.316 kb on + strand, within Psyr_5050 at 5991.870 kb on - strand at 5991.870 kb on - strand at 5991.870 kb on - strand at 5991.870 kb on - strand at 5991.969 kb on - strand at 5991.969 kb on - strand at 5991.984 kb on - strand at 5992.031 kb on - strand at 5992.150 kb on - strand at 5992.150 kb on - strand at 5992.152 kb on + strand at 5992.153 kb on - strand at 5992.467 kb on + strand, within Psyr_5051 at 5992.467 kb on + strand, within Psyr_5051 at 5992.468 kb on - strand, within Psyr_5051
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Auraptene 10 mM remove 5,989,918 - -1.9 5,989,918 - -0.4 5,989,924 - +1.2 5,989,958 - +0.4 5,989,958 - -0.6 5,989,958 - -0.2 5,990,066 + +0.8 5,990,066 + +2.2 5,990,066 + -0.4 5,990,066 + +0.3 5,990,066 + -0.6 5,990,066 + -1.2 5,990,066 + -0.1 5,990,066 + +0.7 5,990,066 + -0.1 5,990,066 + +0.0 5,990,066 + +0.1 5,990,066 + +1.8 5,990,067 - +0.2 5,990,067 - +1.0 5,990,067 - -1.0 5,990,067 - +0.0 5,990,067 - +0.0 5,990,067 - +1.1 5,990,129 + -0.5 5,990,129 + -0.6 5,990,129 + +0.1 5,990,129 + +0.4 5,990,129 + -0.7 5,990,129 + -1.1 5,990,129 + -0.0 5,990,129 + +1.0 5,990,130 - -0.2 5,990,130 - +1.1 5,990,166 - -1.6 5,990,166 - -1.3 5,990,169 + +0.9 5,990,196 - +0.1 5,990,196 - +0.2 5,990,310 + Psyr_5049 0.18 -0.7 5,990,310 + Psyr_5049 0.18 -0.3 5,990,310 + Psyr_5049 0.18 -0.8 5,990,311 - Psyr_5049 0.18 -1.4 5,990,344 + Psyr_5049 0.23 -0.3 5,990,344 + Psyr_5049 0.23 +0.2 5,990,344 + Psyr_5049 0.23 +2.3 5,990,344 + Psyr_5049 0.23 -0.6 5,990,344 + Psyr_5049 0.23 -0.2 5,990,345 - Psyr_5049 0.24 +0.5 5,990,345 - Psyr_5049 0.24 -0.1 5,990,345 - Psyr_5049 0.24 -1.4 5,990,345 - Psyr_5049 0.24 -0.8 5,990,345 - Psyr_5049 0.24 -1.9 5,990,345 - Psyr_5049 0.24 -0.2 5,990,471 - Psyr_5049 0.44 +0.3 5,990,498 - Psyr_5049 0.48 -1.8 5,990,538 + Psyr_5049 0.55 +1.9 5,990,538 + Psyr_5049 0.55 +1.0 5,990,538 + Psyr_5049 0.55 +0.7 5,990,539 - Psyr_5049 0.55 +1.2 5,990,539 - Psyr_5049 0.55 -1.1 5,990,539 - Psyr_5049 0.55 +0.4 5,990,539 - Psyr_5049 0.55 -0.6 5,990,542 + Psyr_5049 0.56 +0.5 5,990,542 + Psyr_5049 0.56 -1.3 5,990,542 + Psyr_5049 0.56 +0.3 5,990,542 + Psyr_5049 0.56 -0.8 5,990,542 + Psyr_5049 0.56 -1.1 5,990,542 + Psyr_5049 0.56 -0.1 5,990,542 + Psyr_5049 0.56 +0.2 5,990,542 + Psyr_5049 0.56 -1.1 5,990,542 + Psyr_5049 0.56 +0.1 5,990,542 + Psyr_5049 0.56 +0.9 5,990,542 + Psyr_5049 0.56 -0.6 5,990,542 + Psyr_5049 0.56 +1.2 5,990,542 + Psyr_5049 0.56 -0.4 5,990,542 + Psyr_5049 0.56 -0.6 5,990,542 + Psyr_5049 0.56 +1.0 5,990,542 + Psyr_5049 0.56 -2.1 5,990,542 + Psyr_5049 0.56 -0.7 5,990,543 - Psyr_5049 0.56 +1.1 5,990,543 - Psyr_5049 0.56 +0.1 5,990,543 - Psyr_5049 0.56 +0.8 5,990,543 - Psyr_5049 0.56 -0.0 5,990,543 - Psyr_5049 0.56 +0.7 5,990,543 - Psyr_5049 0.56 -0.3 5,990,543 - Psyr_5049 0.56 -0.9 5,990,543 - Psyr_5049 0.56 +0.0 5,990,543 - Psyr_5049 0.56 -1.4 5,990,543 - Psyr_5049 0.56 -0.8 5,990,543 - Psyr_5049 0.56 -0.6 5,990,543 - Psyr_5049 0.56 +0.7 5,990,562 + Psyr_5049 0.59 -1.6 5,990,563 - Psyr_5049 0.59 +1.2 5,990,579 + Psyr_5049 0.62 -0.4 5,990,579 + Psyr_5049 0.62 -0.6 5,990,579 + Psyr_5049 0.62 +0.2 5,990,579 + Psyr_5049 0.62 -0.8 5,990,580 - Psyr_5049 0.62 -0.9 5,990,580 - Psyr_5049 0.62 +0.8 5,990,633 - Psyr_5049 0.70 -0.1 5,990,633 - Psyr_5049 0.70 -0.0 5,990,730 + Psyr_5049 0.86 -0.4 5,990,730 + Psyr_5049 0.86 -1.7 5,990,730 + Psyr_5049 0.86 -1.4 5,990,730 + Psyr_5049 0.86 +0.2 5,990,730 + Psyr_5049 0.86 -1.9 5,990,731 - Psyr_5049 0.86 +0.6 5,990,731 - Psyr_5049 0.86 +0.0 5,990,731 - Psyr_5049 0.86 -0.5 5,990,731 - Psyr_5049 0.86 +1.1 5,990,749 + Psyr_5049 0.89 +1.4 5,990,749 + Psyr_5049 0.89 +0.2 5,990,749 + Psyr_5049 0.89 +0.9 5,990,749 + Psyr_5049 0.89 -1.4 5,990,750 - Psyr_5049 0.89 -2.0 5,990,750 - Psyr_5049 0.89 +3.6 5,990,750 - Psyr_5049 0.89 -0.8 5,990,750 - Psyr_5049 0.89 -0.4 5,990,750 - Psyr_5049 0.89 +0.1 5,990,752 + Psyr_5049 0.90 -0.4 5,990,752 + Psyr_5049 0.90 -0.5 5,990,752 + Psyr_5049 0.90 -1.1 5,990,752 + Psyr_5049 0.90 +0.6 5,990,752 + Psyr_5049 0.90 +1.6 5,990,752 + Psyr_5049 0.90 -0.0 5,990,753 - -0.1 5,990,753 - -1.4 5,990,753 - -1.6 5,990,753 - -3.2 5,990,753 - -2.2 5,990,753 - +0.2 5,990,788 + -1.3 5,990,789 - +0.4 5,990,789 - +1.6 5,990,831 + -1.2 5,990,832 - -2.1 5,990,832 - -0.9 5,991,091 + Psyr_5050 0.24 -0.0 5,991,092 - Psyr_5050 0.24 -0.8 5,991,092 - Psyr_5050 0.24 -0.8 5,991,316 + Psyr_5050 0.48 -1.4 5,991,316 + Psyr_5050 0.48 -0.7 5,991,316 + Psyr_5050 0.48 +0.6 5,991,870 - +0.7 5,991,870 - -1.1 5,991,870 - -0.1 5,991,870 - +0.0 5,991,969 - +0.5 5,991,969 - +1.0 5,991,984 - +0.2 5,992,031 - -1.0 5,992,150 - -0.3 5,992,150 - +0.5 5,992,152 + -0.9 5,992,153 - -0.3 5,992,467 + Psyr_5051 0.27 +0.6 5,992,467 + Psyr_5051 0.27 -0.5 5,992,468 - Psyr_5051 0.27 -1.6
Or see this region's nucleotide sequence