Experiment: KB with Auraptene 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3622 and Psyr_3623 are separated by 27 nucleotides Psyr_3623 and Psyr_3624 are separated by 58 nucleotides Psyr_3624 and Psyr_3625 overlap by 11 nucleotides
Psyr_3622: Psyr_3622 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase, at 4,306,098 to 4,307,444
_3622
Psyr_3623: Psyr_3623 - Protein of unknown function DUF1127, at 4,307,472 to 4,307,705
_3623
Psyr_3624: Psyr_3624 - transcriptional regulator, LysR family, at 4,307,764 to 4,308,654
_3624
Psyr_3625: Psyr_3625 - Protein of unknown function DUF81, at 4,308,644 to 4,309,375
_3625
Position (kb) 4307
4308 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4306.569 kb on + strand, within Psyr_3622 at 4306.569 kb on + strand, within Psyr_3622 at 4306.569 kb on + strand, within Psyr_3622 at 4306.569 kb on + strand, within Psyr_3622 at 4306.570 kb on - strand, within Psyr_3622 at 4306.570 kb on - strand, within Psyr_3622 at 4306.570 kb on - strand, within Psyr_3622 at 4306.570 kb on - strand, within Psyr_3622 at 4306.692 kb on + strand, within Psyr_3622 at 4306.693 kb on - strand, within Psyr_3622 at 4306.693 kb on - strand, within Psyr_3622 at 4306.815 kb on + strand, within Psyr_3622 at 4306.816 kb on - strand, within Psyr_3622 at 4306.860 kb on + strand, within Psyr_3622 at 4306.860 kb on + strand, within Psyr_3622 at 4306.860 kb on + strand, within Psyr_3622 at 4306.860 kb on + strand, within Psyr_3622 at 4306.861 kb on - strand, within Psyr_3622 at 4306.861 kb on - strand, within Psyr_3622 at 4307.256 kb on + strand, within Psyr_3622 at 4307.674 kb on - strand, within Psyr_3623 at 4307.810 kb on - strand at 4308.116 kb on - strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.164 kb on - strand, within Psyr_3624 at 4308.628 kb on + strand at 4308.628 kb on + strand at 4308.628 kb on + strand at 4308.628 kb on + strand at 4308.629 kb on - strand at 4308.629 kb on - strand at 4308.629 kb on - strand at 4308.629 kb on - strand at 4308.629 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Auraptene 10 mM remove 4,306,569 + Psyr_3622 0.35 -0.2 4,306,569 + Psyr_3622 0.35 +0.9 4,306,569 + Psyr_3622 0.35 +1.4 4,306,569 + Psyr_3622 0.35 -2.0 4,306,570 - Psyr_3622 0.35 -0.6 4,306,570 - Psyr_3622 0.35 +0.2 4,306,570 - Psyr_3622 0.35 +2.0 4,306,570 - Psyr_3622 0.35 +0.1 4,306,692 + Psyr_3622 0.44 -2.5 4,306,693 - Psyr_3622 0.44 +2.1 4,306,693 - Psyr_3622 0.44 +0.3 4,306,815 + Psyr_3622 0.53 -0.3 4,306,816 - Psyr_3622 0.53 -1.8 4,306,860 + Psyr_3622 0.57 -0.0 4,306,860 + Psyr_3622 0.57 +2.0 4,306,860 + Psyr_3622 0.57 +2.2 4,306,860 + Psyr_3622 0.57 +0.5 4,306,861 - Psyr_3622 0.57 -1.2 4,306,861 - Psyr_3622 0.57 -0.7 4,307,256 + Psyr_3622 0.86 -0.6 4,307,674 - Psyr_3623 0.86 -1.8 4,307,810 - +0.9 4,308,116 - Psyr_3624 0.40 -0.8 4,308,116 - Psyr_3624 0.40 +0.5 4,308,116 - Psyr_3624 0.40 -2.3 4,308,116 - Psyr_3624 0.40 -2.0 4,308,164 - Psyr_3624 0.45 +1.6 4,308,628 + -0.5 4,308,628 + +0.0 4,308,628 + +0.6 4,308,628 + -0.6 4,308,629 - +1.0 4,308,629 - -1.4 4,308,629 - -2.0 4,308,629 - +0.3 4,308,629 - +1.0
Or see this region's nucleotide sequence