Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1134

Experiment: KB with Auraptene 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1133 and Psyr_1134 overlap by 4 nucleotidesPsyr_1134 and Psyr_1135 are separated by 1 nucleotides Psyr_1133: Psyr_1133 - Fimbrial biogenesis outer membrane usher protein, at 1,283,830 to 1,286,364 _1133 Psyr_1134: Psyr_1134 - pili assembly chaperone, at 1,286,361 to 1,287,146 _1134 Psyr_1135: Psyr_1135 - conserved hypothetical protein, at 1,287,148 to 1,288,146 _1135 Position (kb) 1286 1287 1288Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1285.365 kb on - strand, within Psyr_1133at 1285.365 kb on - strand, within Psyr_1133at 1285.447 kb on + strand, within Psyr_1133at 1285.448 kb on - strand, within Psyr_1133at 1285.448 kb on - strand, within Psyr_1133at 1285.448 kb on - strand, within Psyr_1133at 1285.456 kb on + strand, within Psyr_1133at 1285.456 kb on + strand, within Psyr_1133at 1285.456 kb on + strand, within Psyr_1133at 1285.456 kb on + strand, within Psyr_1133at 1285.457 kb on - strand, within Psyr_1133at 1285.457 kb on - strand, within Psyr_1133at 1285.457 kb on - strand, within Psyr_1133at 1285.457 kb on - strand, within Psyr_1133at 1285.457 kb on - strand, within Psyr_1133at 1285.457 kb on - strand, within Psyr_1133at 1285.457 kb on - strand, within Psyr_1133at 1285.458 kb on + strand, within Psyr_1133at 1285.483 kb on + strand, within Psyr_1133at 1285.483 kb on + strand, within Psyr_1133at 1285.636 kb on + strand, within Psyr_1133at 1285.691 kb on - strand, within Psyr_1133at 1285.691 kb on - strand, within Psyr_1133at 1285.698 kb on - strand, within Psyr_1133at 1285.786 kb on - strand, within Psyr_1133at 1285.802 kb on - strand, within Psyr_1133at 1285.802 kb on - strand, within Psyr_1133at 1285.802 kb on - strand, within Psyr_1133at 1285.938 kb on + strand, within Psyr_1133at 1286.056 kb on - strand, within Psyr_1133at 1286.380 kb on + strandat 1286.531 kb on - strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.902 kb on - strand, within Psyr_1134at 1287.148 kb on - strandat 1287.324 kb on - strand, within Psyr_1135at 1287.399 kb on + strand, within Psyr_1135at 1287.399 kb on + strand, within Psyr_1135at 1287.400 kb on - strand, within Psyr_1135at 1287.400 kb on - strand, within Psyr_1135at 1287.403 kb on + strand, within Psyr_1135at 1287.403 kb on + strand, within Psyr_1135at 1287.404 kb on - strand, within Psyr_1135at 1287.508 kb on + strand, within Psyr_1135at 1287.706 kb on + strand, within Psyr_1135at 1287.706 kb on + strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.963 kb on - strand, within Psyr_1135at 1287.969 kb on + strand, within Psyr_1135at 1287.995 kb on + strand, within Psyr_1135at 1288.000 kb on + strand, within Psyr_1135at 1288.000 kb on + strand, within Psyr_1135at 1288.001 kb on - strand, within Psyr_1135at 1288.138 kb on + strandat 1288.139 kb on - strandat 1288.139 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Auraptene 10 mM
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1,285,365 - Psyr_1133 0.61 -0.7
1,285,365 - Psyr_1133 0.61 -0.1
1,285,447 + Psyr_1133 0.64 +0.9
1,285,448 - Psyr_1133 0.64 -0.1
1,285,448 - Psyr_1133 0.64 -0.7
1,285,448 - Psyr_1133 0.64 +1.3
1,285,456 + Psyr_1133 0.64 +1.3
1,285,456 + Psyr_1133 0.64 -0.4
1,285,456 + Psyr_1133 0.64 -0.1
1,285,456 + Psyr_1133 0.64 -0.7
1,285,457 - Psyr_1133 0.64 +0.0
1,285,457 - Psyr_1133 0.64 -0.2
1,285,457 - Psyr_1133 0.64 +1.5
1,285,457 - Psyr_1133 0.64 -1.8
1,285,457 - Psyr_1133 0.64 +1.5
1,285,457 - Psyr_1133 0.64 +4.2
1,285,457 - Psyr_1133 0.64 +0.2
1,285,458 + Psyr_1133 0.64 +3.4
1,285,483 + Psyr_1133 0.65 +0.0
1,285,483 + Psyr_1133 0.65 +4.5
1,285,636 + Psyr_1133 0.71 +2.0
1,285,691 - Psyr_1133 0.73 +0.3
1,285,691 - Psyr_1133 0.73 +1.2
1,285,698 - Psyr_1133 0.74 +0.9
1,285,786 - Psyr_1133 0.77 +0.6
1,285,802 - Psyr_1133 0.78 +1.0
1,285,802 - Psyr_1133 0.78 -0.5
1,285,802 - Psyr_1133 0.78 +4.9
1,285,938 + Psyr_1133 0.83 -0.1
1,286,056 - Psyr_1133 0.88 +0.2
1,286,380 + -3.0
1,286,531 - Psyr_1134 0.22 -0.0
1,286,709 + Psyr_1134 0.44 +0.2
1,286,709 + Psyr_1134 0.44 -2.3
1,286,709 + Psyr_1134 0.44 -0.3
1,286,709 + Psyr_1134 0.44 +0.7
1,286,709 + Psyr_1134 0.44 +0.5
1,286,709 + Psyr_1134 0.44 -0.1
1,286,710 - Psyr_1134 0.44 -0.1
1,286,710 - Psyr_1134 0.44 +0.5
1,286,710 - Psyr_1134 0.44 -1.8
1,286,710 - Psyr_1134 0.44 -1.5
1,286,710 - Psyr_1134 0.44 +1.0
1,286,710 - Psyr_1134 0.44 +0.0
1,286,710 - Psyr_1134 0.44 +0.8
1,286,710 - Psyr_1134 0.44 -1.1
1,286,710 - Psyr_1134 0.44 +2.5
1,286,710 - Psyr_1134 0.44 -0.5
1,286,902 - Psyr_1134 0.69 +0.9
1,287,148 - +0.7
1,287,324 - Psyr_1135 0.18 +0.5
1,287,399 + Psyr_1135 0.25 -2.7
1,287,399 + Psyr_1135 0.25 -1.3
1,287,400 - Psyr_1135 0.25 -0.1
1,287,400 - Psyr_1135 0.25 +0.3
1,287,403 + Psyr_1135 0.26 -1.2
1,287,403 + Psyr_1135 0.26 +0.0
1,287,404 - Psyr_1135 0.26 -0.2
1,287,508 + Psyr_1135 0.36 +0.2
1,287,706 + Psyr_1135 0.56 +1.3
1,287,706 + Psyr_1135 0.56 +1.0
1,287,707 - Psyr_1135 0.56 +0.0
1,287,707 - Psyr_1135 0.56 +1.3
1,287,707 - Psyr_1135 0.56 +0.0
1,287,707 - Psyr_1135 0.56 -0.5
1,287,963 - Psyr_1135 0.82 +1.0
1,287,969 + Psyr_1135 0.82 -0.9
1,287,995 + Psyr_1135 0.85 +3.0
1,288,000 + Psyr_1135 0.85 -0.6
1,288,000 + Psyr_1135 0.85 +0.3
1,288,001 - Psyr_1135 0.85 +0.5
1,288,138 + -0.5
1,288,139 - -1.4
1,288,139 - -0.5

Or see this region's nucleotide sequence