Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1002

Experiment: KB with Auraptene 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1001 and Psyr_1002 overlap by 4 nucleotidesPsyr_1002 and Psyr_1003 overlap by 8 nucleotides Psyr_1001: Psyr_1001 - nucleoside-binding protein, at 1,134,706 to 1,135,797 _1001 Psyr_1002: Psyr_1002 - nucleoside ABC transporter ATP-binding protein, at 1,135,794 to 1,137,305 _1002 Psyr_1003: Psyr_1003 - nucleoside ABC transporter membrane protein, at 1,137,298 to 1,138,407 _1003 Position (kb) 1135 1136 1137 1138Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1135.114 kb on - strand, within Psyr_1001at 1135.118 kb on - strand, within Psyr_1001at 1135.118 kb on - strand, within Psyr_1001at 1135.218 kb on + strand, within Psyr_1001at 1135.219 kb on - strand, within Psyr_1001at 1135.279 kb on + strand, within Psyr_1001at 1135.279 kb on + strand, within Psyr_1001at 1135.279 kb on + strand, within Psyr_1001at 1135.280 kb on - strand, within Psyr_1001at 1135.280 kb on - strand, within Psyr_1001at 1135.280 kb on - strand, within Psyr_1001at 1135.280 kb on - strand, within Psyr_1001at 1135.678 kb on + strand, within Psyr_1001at 1135.678 kb on + strand, within Psyr_1001at 1135.679 kb on - strand, within Psyr_1001at 1135.679 kb on - strand, within Psyr_1001at 1135.959 kb on + strand, within Psyr_1002at 1135.960 kb on - strand, within Psyr_1002at 1135.960 kb on - strand, within Psyr_1002at 1136.425 kb on - strand, within Psyr_1002at 1136.425 kb on - strand, within Psyr_1002at 1136.465 kb on - strand, within Psyr_1002at 1136.652 kb on + strand, within Psyr_1002at 1136.653 kb on - strand, within Psyr_1002at 1136.968 kb on + strand, within Psyr_1002at 1136.968 kb on + strand, within Psyr_1002at 1136.968 kb on + strand, within Psyr_1002at 1136.968 kb on + strand, within Psyr_1002at 1136.968 kb on + strand, within Psyr_1002at 1136.968 kb on + strand, within Psyr_1002at 1136.968 kb on + strand, within Psyr_1002at 1136.969 kb on - strand, within Psyr_1002at 1136.969 kb on - strand, within Psyr_1002at 1137.194 kb on - strandat 1137.194 kb on - strandat 1137.311 kb on + strandat 1137.311 kb on + strandat 1137.312 kb on - strandat 1137.312 kb on - strandat 1137.808 kb on + strand, within Psyr_1003at 1137.808 kb on + strand, within Psyr_1003at 1137.808 kb on + strand, within Psyr_1003at 1137.808 kb on + strand, within Psyr_1003at 1137.809 kb on - strand, within Psyr_1003at 1137.809 kb on - strand, within Psyr_1003at 1137.809 kb on - strand, within Psyr_1003at 1137.809 kb on - strand, within Psyr_1003at 1137.809 kb on - strand, within Psyr_1003at 1137.929 kb on - strand, within Psyr_1003at 1137.929 kb on - strand, within Psyr_1003at 1137.930 kb on + strand, within Psyr_1003at 1137.931 kb on - strand, within Psyr_1003at 1138.165 kb on + strand, within Psyr_1003at 1138.166 kb on - strand, within Psyr_1003at 1138.291 kb on + strand, within Psyr_1003at 1138.291 kb on + strand, within Psyr_1003at 1138.292 kb on - strand, within Psyr_1003at 1138.292 kb on - strand, within Psyr_1003

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Auraptene 10 mM
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1,134,820 + Psyr_1001 0.10 -0.5
1,134,820 + Psyr_1001 0.10 +0.2
1,134,820 + Psyr_1001 0.10 -0.5
1,134,820 + Psyr_1001 0.10 -0.5
1,134,820 + Psyr_1001 0.10 -1.9
1,134,820 + Psyr_1001 0.10 -0.9
1,134,820 + Psyr_1001 0.10 -2.2
1,134,820 + Psyr_1001 0.10 -0.3
1,134,820 + Psyr_1001 0.10 -1.6
1,134,820 + Psyr_1001 0.10 -0.1
1,134,820 + Psyr_1001 0.10 +2.4
1,134,820 + Psyr_1001 0.10 +0.1
1,134,821 - Psyr_1001 0.11 -0.1
1,134,821 - Psyr_1001 0.11 -0.1
1,134,821 - Psyr_1001 0.11 -0.4
1,134,821 - Psyr_1001 0.11 -0.1
1,134,821 - Psyr_1001 0.11 +0.9
1,134,821 - Psyr_1001 0.11 +1.1
1,134,821 - Psyr_1001 0.11 -1.8
1,134,821 - Psyr_1001 0.11 -1.7
1,135,114 - Psyr_1001 0.37 +2.7
1,135,118 - Psyr_1001 0.38 +1.9
1,135,118 - Psyr_1001 0.38 -1.0
1,135,218 + Psyr_1001 0.47 -1.2
1,135,219 - Psyr_1001 0.47 -0.4
1,135,279 + Psyr_1001 0.52 +0.3
1,135,279 + Psyr_1001 0.52 +0.5
1,135,279 + Psyr_1001 0.52 -0.4
1,135,280 - Psyr_1001 0.53 -1.9
1,135,280 - Psyr_1001 0.53 -0.6
1,135,280 - Psyr_1001 0.53 +1.3
1,135,280 - Psyr_1001 0.53 -1.9
1,135,678 + Psyr_1001 0.89 +0.4
1,135,678 + Psyr_1001 0.89 -0.9
1,135,679 - Psyr_1001 0.89 -0.5
1,135,679 - Psyr_1001 0.89 +0.2
1,135,959 + Psyr_1002 0.11 +1.1
1,135,960 - Psyr_1002 0.11 +1.2
1,135,960 - Psyr_1002 0.11 -0.8
1,136,425 - Psyr_1002 0.42 +0.1
1,136,425 - Psyr_1002 0.42 +0.8
1,136,465 - Psyr_1002 0.44 +1.1
1,136,652 + Psyr_1002 0.57 -0.6
1,136,653 - Psyr_1002 0.57 +1.1
1,136,968 + Psyr_1002 0.78 -0.5
1,136,968 + Psyr_1002 0.78 -1.2
1,136,968 + Psyr_1002 0.78 +0.5
1,136,968 + Psyr_1002 0.78 -0.1
1,136,968 + Psyr_1002 0.78 -0.4
1,136,968 + Psyr_1002 0.78 -2.4
1,136,968 + Psyr_1002 0.78 +0.2
1,136,969 - Psyr_1002 0.78 +0.5
1,136,969 - Psyr_1002 0.78 +0.2
1,137,194 - +0.8
1,137,194 - +0.1
1,137,311 + -0.5
1,137,311 + +3.7
1,137,312 - +0.1
1,137,312 - +3.1
1,137,808 + Psyr_1003 0.46 +2.1
1,137,808 + Psyr_1003 0.46 -0.3
1,137,808 + Psyr_1003 0.46 +0.1
1,137,808 + Psyr_1003 0.46 -0.7
1,137,809 - Psyr_1003 0.46 -1.1
1,137,809 - Psyr_1003 0.46 -1.3
1,137,809 - Psyr_1003 0.46 +1.4
1,137,809 - Psyr_1003 0.46 -2.2
1,137,809 - Psyr_1003 0.46 -1.0
1,137,929 - Psyr_1003 0.57 -1.7
1,137,929 - Psyr_1003 0.57 +0.0
1,137,930 + Psyr_1003 0.57 +2.1
1,137,931 - Psyr_1003 0.57 -0.4
1,138,165 + Psyr_1003 0.78 +1.1
1,138,166 - Psyr_1003 0.78 +0.2
1,138,291 + Psyr_1003 0.89 +1.0
1,138,291 + Psyr_1003 0.89 +1.4
1,138,292 - Psyr_1003 0.90 -1.3
1,138,292 - Psyr_1003 0.90 -0.4

Or see this region's nucleotide sequence