Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0611

Experiment: KB with Auraptene 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0610 and Psyr_0611 overlap by 4 nucleotidesPsyr_0611 and Psyr_0612 are separated by 66 nucleotidesPsyr_0612 and Psyr_0613 are separated by 1 nucleotides Psyr_0610: Psyr_0610 - ABC-2, at 700,534 to 701,310 _0610 Psyr_0611: Psyr_0611 - ABC transporter, at 701,307 to 702,011 _0611 Psyr_0612: Psyr_0612 - Nucleotidyl transferase, at 702,078 to 702,839 _0612 Psyr_0613: Psyr_0613 - conserved hypothetical protein, at 702,841 to 703,455 _0613 Position (kb) 701 702 703Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 700.332 kb on - strandat 700.386 kb on + strandat 700.409 kb on - strandat 700.410 kb on + strandat 700.411 kb on - strandat 700.411 kb on - strandat 700.437 kb on + strandat 700.437 kb on + strandat 700.437 kb on + strandat 700.437 kb on + strandat 700.438 kb on - strandat 700.438 kb on - strandat 700.461 kb on + strandat 700.585 kb on - strandat 700.678 kb on + strand, within Psyr_0610at 700.678 kb on + strand, within Psyr_0610at 700.678 kb on + strand, within Psyr_0610at 700.678 kb on + strand, within Psyr_0610at 700.678 kb on + strand, within Psyr_0610at 700.679 kb on - strand, within Psyr_0610at 700.681 kb on + strand, within Psyr_0610at 700.696 kb on + strand, within Psyr_0610at 700.696 kb on + strand, within Psyr_0610at 700.697 kb on - strand, within Psyr_0610at 700.697 kb on - strand, within Psyr_0610at 700.697 kb on - strand, within Psyr_0610at 700.698 kb on + strand, within Psyr_0610at 700.698 kb on + strand, within Psyr_0610at 700.698 kb on + strand, within Psyr_0610at 700.698 kb on + strand, within Psyr_0610at 700.699 kb on - strand, within Psyr_0610at 700.906 kb on + strand, within Psyr_0610at 700.907 kb on - strand, within Psyr_0610at 700.917 kb on - strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.100 kb on - strand, within Psyr_0610at 701.100 kb on - strand, within Psyr_0610at 701.146 kb on + strand, within Psyr_0610at 701.147 kb on - strand, within Psyr_0610at 701.164 kb on + strand, within Psyr_0610at 701.164 kb on + strand, within Psyr_0610at 701.164 kb on + strand, within Psyr_0610at 701.165 kb on - strand, within Psyr_0610at 701.302 kb on + strandat 701.302 kb on + strandat 701.302 kb on + strandat 701.302 kb on + strandat 701.302 kb on + strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.306 kb on + strandat 701.306 kb on + strandat 701.306 kb on + strandat 701.306 kb on + strandat 701.306 kb on + strandat 701.452 kb on + strand, within Psyr_0611at 701.452 kb on + strand, within Psyr_0611at 701.452 kb on + strand, within Psyr_0611at 701.452 kb on + strand, within Psyr_0611at 701.452 kb on + strand, within Psyr_0611at 701.453 kb on - strand, within Psyr_0611at 701.453 kb on - strand, within Psyr_0611at 701.453 kb on - strand, within Psyr_0611at 701.511 kb on - strand, within Psyr_0611at 701.511 kb on - strand, within Psyr_0611at 701.516 kb on + strand, within Psyr_0611at 701.517 kb on - strand, within Psyr_0611at 701.517 kb on - strand, within Psyr_0611at 701.642 kb on + strand, within Psyr_0611at 701.643 kb on - strand, within Psyr_0611at 701.647 kb on - strand, within Psyr_0611at 701.647 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.837 kb on - strand, within Psyr_0611at 701.936 kb on - strand, within Psyr_0611at 701.936 kb on - strand, within Psyr_0611at 701.946 kb on - strandat 702.007 kb on - strandat 702.163 kb on + strand, within Psyr_0612at 702.163 kb on + strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.173 kb on - strand, within Psyr_0612at 702.234 kb on - strand, within Psyr_0612at 702.234 kb on - strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.411 kb on + strand, within Psyr_0612at 702.411 kb on + strand, within Psyr_0612at 702.411 kb on + strand, within Psyr_0612at 702.425 kb on + strand, within Psyr_0612at 702.426 kb on - strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.436 kb on - strand, within Psyr_0612at 702.563 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.593 kb on + strand, within Psyr_0612at 702.593 kb on + strand, within Psyr_0612at 702.594 kb on - strand, within Psyr_0612at 702.594 kb on - strand, within Psyr_0612at 702.672 kb on + strand, within Psyr_0612at 702.672 kb on + strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.726 kb on + strand, within Psyr_0612at 702.726 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.888 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Auraptene 10 mM
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700,332 - -0.2
700,386 + -1.2
700,409 - +1.4
700,410 + -1.0
700,411 - +0.7
700,411 - -0.9
700,437 + -0.8
700,437 + +0.7
700,437 + -1.5
700,437 + +1.1
700,438 - -1.5
700,438 - -0.1
700,461 + -0.3
700,585 - +0.3
700,678 + Psyr_0610 0.19 +0.6
700,678 + Psyr_0610 0.19 +2.1
700,678 + Psyr_0610 0.19 -3.1
700,678 + Psyr_0610 0.19 +0.6
700,678 + Psyr_0610 0.19 -2.8
700,679 - Psyr_0610 0.19 +0.3
700,681 + Psyr_0610 0.19 +0.4
700,696 + Psyr_0610 0.21 -0.4
700,696 + Psyr_0610 0.21 +0.2
700,697 - Psyr_0610 0.21 +3.1
700,697 - Psyr_0610 0.21 +0.8
700,697 - Psyr_0610 0.21 +0.5
700,698 + Psyr_0610 0.21 +0.0
700,698 + Psyr_0610 0.21 -1.3
700,698 + Psyr_0610 0.21 -2.8
700,698 + Psyr_0610 0.21 -1.6
700,699 - Psyr_0610 0.21 -0.2
700,906 + Psyr_0610 0.48 -1.0
700,907 - Psyr_0610 0.48 +2.6
700,917 - Psyr_0610 0.49 -2.1
701,099 + Psyr_0610 0.73 -1.1
701,099 + Psyr_0610 0.73 +0.3
701,099 + Psyr_0610 0.73 -0.6
701,099 + Psyr_0610 0.73 +0.9
701,100 - Psyr_0610 0.73 +1.8
701,100 - Psyr_0610 0.73 +0.2
701,146 + Psyr_0610 0.79 +1.1
701,147 - Psyr_0610 0.79 +0.4
701,164 + Psyr_0610 0.81 -1.4
701,164 + Psyr_0610 0.81 -0.7
701,164 + Psyr_0610 0.81 -0.0
701,165 - Psyr_0610 0.81 +0.5
701,302 + -1.9
701,302 + -1.1
701,302 + -1.1
701,302 + -0.1
701,302 + -0.9
701,303 - -0.7
701,303 - -0.9
701,303 - -0.4
701,303 - -0.2
701,303 - -0.1
701,303 - -0.8
701,306 + -1.4
701,306 + -1.7
701,306 + +0.4
701,306 + +0.5
701,306 + -0.3
701,452 + Psyr_0611 0.21 -4.2
701,452 + Psyr_0611 0.21 +0.4
701,452 + Psyr_0611 0.21 -0.8
701,452 + Psyr_0611 0.21 -1.0
701,452 + Psyr_0611 0.21 -1.2
701,453 - Psyr_0611 0.21 +1.1
701,453 - Psyr_0611 0.21 -1.8
701,453 - Psyr_0611 0.21 +0.3
701,511 - Psyr_0611 0.29 -0.4
701,511 - Psyr_0611 0.29 +0.9
701,516 + Psyr_0611 0.30 -1.9
701,517 - Psyr_0611 0.30 -0.8
701,517 - Psyr_0611 0.30 -1.7
701,642 + Psyr_0611 0.48 -1.7
701,643 - Psyr_0611 0.48 +0.3
701,647 - Psyr_0611 0.48 +1.8
701,647 - Psyr_0611 0.48 -1.4
701,773 - Psyr_0611 0.66 -1.2
701,773 - Psyr_0611 0.66 -1.1
701,773 - Psyr_0611 0.66 -0.9
701,773 - Psyr_0611 0.66 +0.6
701,773 - Psyr_0611 0.66 -0.6
701,773 - Psyr_0611 0.66 -1.6
701,773 - Psyr_0611 0.66 -0.8
701,773 - Psyr_0611 0.66 -0.4
701,837 - Psyr_0611 0.75 -0.5
701,936 - Psyr_0611 0.89 +0.9
701,936 - Psyr_0611 0.89 -0.7
701,946 - +0.6
702,007 - -1.2
702,163 + Psyr_0612 0.11 +0.1
702,163 + Psyr_0612 0.11 +0.9
702,164 - Psyr_0612 0.11 -0.3
702,164 - Psyr_0612 0.11 +0.1
702,164 - Psyr_0612 0.11 +0.5
702,164 - Psyr_0612 0.11 -2.1
702,173 - Psyr_0612 0.12 +0.8
702,234 - Psyr_0612 0.20 -0.6
702,234 - Psyr_0612 0.20 -0.4
702,351 + Psyr_0612 0.36 -0.5
702,351 + Psyr_0612 0.36 +0.4
702,351 + Psyr_0612 0.36 +0.0
702,351 + Psyr_0612 0.36 +0.5
702,352 - Psyr_0612 0.36 -0.4
702,352 - Psyr_0612 0.36 -0.3
702,352 - Psyr_0612 0.36 -0.5
702,352 - Psyr_0612 0.36 -0.2
702,352 - Psyr_0612 0.36 -1.1
702,411 + Psyr_0612 0.44 +3.0
702,411 + Psyr_0612 0.44 +0.5
702,411 + Psyr_0612 0.44 -0.4
702,425 + Psyr_0612 0.46 +2.1
702,426 - Psyr_0612 0.46 -0.3
702,427 + Psyr_0612 0.46 -0.2
702,427 + Psyr_0612 0.46 -0.0
702,427 + Psyr_0612 0.46 -0.8
702,427 + Psyr_0612 0.46 -2.7
702,427 + Psyr_0612 0.46 -1.6
702,427 + Psyr_0612 0.46 +1.1
702,427 + Psyr_0612 0.46 +0.6
702,427 + Psyr_0612 0.46 -0.9
702,427 + Psyr_0612 0.46 +0.5
702,428 - Psyr_0612 0.46 -0.2
702,428 - Psyr_0612 0.46 -0.8
702,428 - Psyr_0612 0.46 -0.1
702,428 - Psyr_0612 0.46 -1.3
702,436 - Psyr_0612 0.47 +1.1
702,563 + Psyr_0612 0.64 +1.4
702,591 + Psyr_0612 0.67 +0.6
702,591 + Psyr_0612 0.67 +0.7
702,591 + Psyr_0612 0.67 -0.4
702,591 + Psyr_0612 0.67 +1.1
702,592 - Psyr_0612 0.67 -1.9
702,592 - Psyr_0612 0.67 -0.3
702,592 - Psyr_0612 0.67 +0.3
702,592 - Psyr_0612 0.67 -2.1
702,592 - Psyr_0612 0.67 -2.2
702,592 - Psyr_0612 0.67 -0.7
702,592 - Psyr_0612 0.67 -1.9
702,592 - Psyr_0612 0.67 +1.3
702,592 - Psyr_0612 0.67 +0.9
702,592 - Psyr_0612 0.67 +0.9
702,593 + Psyr_0612 0.68 -0.7
702,593 + Psyr_0612 0.68 +0.3
702,594 - Psyr_0612 0.68 -0.8
702,594 - Psyr_0612 0.68 +0.2
702,672 + Psyr_0612 0.78 -0.3
702,672 + Psyr_0612 0.78 -0.5
702,673 - Psyr_0612 0.78 -1.9
702,673 - Psyr_0612 0.78 -0.5
702,673 - Psyr_0612 0.78 -0.9
702,726 + Psyr_0612 0.85 -0.1
702,726 + Psyr_0612 0.85 +0.3
702,756 + Psyr_0612 0.89 -0.7
702,756 + Psyr_0612 0.89 -0.1
702,756 + Psyr_0612 0.89 +0.4
702,756 + Psyr_0612 0.89 +0.1
702,756 + Psyr_0612 0.89 -0.5
702,756 + Psyr_0612 0.89 -1.4
702,756 + Psyr_0612 0.89 -0.4
702,757 - Psyr_0612 0.89 +0.3
702,757 - Psyr_0612 0.89 -0.4
702,757 - Psyr_0612 0.89 +3.7
702,757 - Psyr_0612 0.89 +0.0
702,757 - Psyr_0612 0.89 +0.8
702,757 - Psyr_0612 0.89 -0.6
702,888 + -1.5

Or see this region's nucleotide sequence