Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03450 and PS417_03455 are separated by 263 nucleotides PS417_03455 and PS417_03460 overlap by 4 nucleotides
PS417_03450: PS417_03450 - RNA polymerase sigma factor, at 793,158 to 793,709
_03450
PS417_03455: PS417_03455 - type III secretion protein, at 793,973 to 795,037
_03455
PS417_03460: PS417_03460 - type III secretion protein HrpI, at 795,034 to 797,127
_03460
Position (kb) 793
794
795
796 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 793.235 kb on + strand, within PS417_03450 at 793.294 kb on + strand, within PS417_03450 at 793.488 kb on - strand, within PS417_03450 at 793.555 kb on + strand, within PS417_03450 at 793.727 kb on - strand at 793.762 kb on + strand at 793.856 kb on + strand at 793.856 kb on + strand at 793.856 kb on + strand at 794.321 kb on + strand, within PS417_03455 at 794.321 kb on + strand, within PS417_03455 at 794.322 kb on - strand, within PS417_03455 at 794.817 kb on + strand at 795.181 kb on - strand at 795.181 kb on - strand at 795.218 kb on - strand at 795.218 kb on - strand at 796.000 kb on + strand, within PS417_03460 at 796.000 kb on + strand, within PS417_03460 at 796.003 kb on + strand, within PS417_03460 at 796.003 kb on + strand, within PS417_03460 at 796.004 kb on - strand, within PS417_03460
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 793,235 + PS417_03450 0.14 +0.1 793,294 + PS417_03450 0.25 -0.5 793,488 - PS417_03450 0.60 +1.8 793,555 + PS417_03450 0.72 -0.3 793,727 - +1.6 793,762 + -1.1 793,856 + +0.5 793,856 + +0.3 793,856 + +0.1 794,321 + PS417_03455 0.33 +1.4 794,321 + PS417_03455 0.33 -0.5 794,322 - PS417_03455 0.33 +0.7 794,817 + -2.0 795,181 - +1.0 795,181 - +0.3 795,218 - -0.1 795,218 - +0.0 796,000 + PS417_03460 0.46 -1.8 796,000 + PS417_03460 0.46 -3.7 796,003 + PS417_03460 0.46 -1.5 796,003 + PS417_03460 0.46 -0.3 796,004 - PS417_03460 0.46 +0.8
Or see this region's nucleotide sequence