Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02755 and PS417_02760 are separated by 97 nucleotides PS417_02760 and PS417_02765 are separated by 71 nucleotides PS417_02765 and PS417_02770 are separated by 193 nucleotides
PS417_02755: PS417_02755 - membrane protein, at 627,276 to 628,145
_02755
PS417_02760: PS417_02760 - AraC family transcriptional regulator, at 628,243 to 629,031
_02760
PS417_02765: PS417_02765 - phosphate starvation-inducible protein PsiF, at 629,103 to 629,405
_02765
PS417_02770: PS417_02770 - membrane protein, at 629,599 to 630,612
_02770
Position (kb) 629
630 Strain fitness (log2 ratio) -2
-1
0
1
2 at 628.138 kb on + strand at 628.138 kb on + strand at 628.138 kb on + strand at 628.138 kb on + strand at 628.139 kb on - strand at 628.203 kb on - strand at 628.205 kb on - strand at 628.242 kb on + strand at 628.243 kb on - strand at 628.259 kb on + strand at 628.260 kb on - strand at 628.260 kb on - strand at 628.297 kb on + strand at 628.471 kb on + strand, within PS417_02760 at 628.471 kb on + strand, within PS417_02760 at 628.471 kb on + strand, within PS417_02760 at 628.471 kb on + strand, within PS417_02760 at 628.472 kb on - strand, within PS417_02760 at 628.472 kb on - strand, within PS417_02760 at 628.492 kb on + strand, within PS417_02760 at 628.492 kb on + strand, within PS417_02760 at 628.493 kb on - strand, within PS417_02760 at 629.037 kb on + strand at 629.038 kb on - strand at 629.051 kb on + strand at 629.051 kb on + strand at 629.051 kb on + strand at 629.052 kb on - strand at 629.183 kb on + strand, within PS417_02765 at 629.599 kb on - strand at 629.599 kb on - strand at 629.627 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.642 kb on - strand at 629.642 kb on - strand at 629.642 kb on - strand at 629.822 kb on + strand, within PS417_02770 at 629.823 kb on - strand, within PS417_02770
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 628,138 + +0.7 628,138 + +1.8 628,138 + -0.2 628,138 + +0.5 628,139 - -1.5 628,203 - -0.2 628,205 - -0.3 628,242 + +1.4 628,243 - +0.8 628,259 + +0.1 628,260 - -0.8 628,260 - -1.3 628,297 + +1.8 628,471 + PS417_02760 0.29 -0.6 628,471 + PS417_02760 0.29 +0.0 628,471 + PS417_02760 0.29 +0.7 628,471 + PS417_02760 0.29 -2.5 628,472 - PS417_02760 0.29 +0.4 628,472 - PS417_02760 0.29 +1.5 628,492 + PS417_02760 0.32 -1.1 628,492 + PS417_02760 0.32 -0.8 628,493 - PS417_02760 0.32 -0.7 629,037 + -1.8 629,038 - -0.1 629,051 + +0.3 629,051 + +0.2 629,051 + +0.5 629,052 - -2.4 629,183 + PS417_02765 0.26 +1.0 629,599 - +0.9 629,599 - +0.0 629,627 + -2.0 629,641 + +1.4 629,641 + +0.9 629,641 + -1.3 629,641 + +0.0 629,641 + +0.7 629,641 + +1.5 629,641 + -1.4 629,642 - -0.6 629,642 - -1.1 629,642 - +1.5 629,822 + PS417_02770 0.22 -0.1 629,823 - PS417_02770 0.22 +0.6
Or see this region's nucleotide sequence