Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27305 and PS417_27315 are separated by 353 nucleotides PS417_27315 and PS417_27320 are separated by 69 nucleotides
PS417_27305: PS417_27305 - 5-formyltetrahydrofolate cyclo-ligase, at 5,892,430 to 5,893,059
_27305
PS417_27315: PS417_27315 - hypothetical protein, at 5,893,413 to 5,893,862
_27315
PS417_27320: PS417_27320 - hemolysin secretion protein D, at 5,893,932 to 5,894,897
_27320
Position (kb) 5893
5894 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5892.416 kb on + strand at 5892.417 kb on + strand at 5892.579 kb on + strand, within PS417_27305 at 5892.580 kb on - strand, within PS417_27305 at 5892.589 kb on + strand, within PS417_27305 at 5892.589 kb on + strand, within PS417_27305 at 5892.590 kb on - strand, within PS417_27305 at 5892.593 kb on + strand, within PS417_27305 at 5892.661 kb on + strand, within PS417_27305 at 5892.662 kb on - strand, within PS417_27305 at 5892.662 kb on - strand, within PS417_27305 at 5892.662 kb on - strand, within PS417_27305 at 5892.872 kb on - strand, within PS417_27305 at 5892.889 kb on + strand, within PS417_27305 at 5893.012 kb on - strand at 5893.021 kb on + strand at 5893.021 kb on + strand at 5893.022 kb on - strand at 5893.134 kb on + strand at 5893.147 kb on + strand at 5893.198 kb on - strand at 5893.198 kb on - strand at 5893.198 kb on - strand at 5893.209 kb on - strand at 5893.209 kb on - strand at 5893.244 kb on - strand at 5893.244 kb on - strand at 5893.295 kb on + strand at 5893.560 kb on + strand, within PS417_27315 at 5893.657 kb on - strand, within PS417_27315 at 5894.161 kb on + strand, within PS417_27320 at 5894.162 kb on - strand, within PS417_27320 at 5894.222 kb on - strand, within PS417_27320 at 5894.325 kb on + strand, within PS417_27320 at 5894.326 kb on - strand, within PS417_27320 at 5894.326 kb on - strand, within PS417_27320 at 5894.326 kb on - strand, within PS417_27320 at 5894.419 kb on + strand, within PS417_27320 at 5894.573 kb on - strand, within PS417_27320 at 5894.601 kb on + strand, within PS417_27320 at 5894.601 kb on + strand, within PS417_27320 at 5894.602 kb on - strand, within PS417_27320 at 5894.716 kb on + strand, within PS417_27320
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 5,892,416 + +0.6 5,892,417 + -0.0 5,892,579 + PS417_27305 0.24 +0.6 5,892,580 - PS417_27305 0.24 +0.3 5,892,589 + PS417_27305 0.25 -0.3 5,892,589 + PS417_27305 0.25 -0.5 5,892,590 - PS417_27305 0.25 -0.3 5,892,593 + PS417_27305 0.26 -3.1 5,892,661 + PS417_27305 0.37 -0.4 5,892,662 - PS417_27305 0.37 +0.4 5,892,662 - PS417_27305 0.37 +0.7 5,892,662 - PS417_27305 0.37 +1.2 5,892,872 - PS417_27305 0.70 -0.5 5,892,889 + PS417_27305 0.73 +0.7 5,893,012 - -1.6 5,893,021 + +1.5 5,893,021 + -0.6 5,893,022 - +1.0 5,893,134 + +0.2 5,893,147 + -0.0 5,893,198 - +0.4 5,893,198 - +0.2 5,893,198 - -0.1 5,893,209 - +0.3 5,893,209 - -0.6 5,893,244 - -0.4 5,893,244 - -0.1 5,893,295 + +0.0 5,893,560 + PS417_27315 0.33 -2.4 5,893,657 - PS417_27315 0.54 -1.2 5,894,161 + PS417_27320 0.24 -0.3 5,894,162 - PS417_27320 0.24 +0.6 5,894,222 - PS417_27320 0.30 -0.3 5,894,325 + PS417_27320 0.41 +0.7 5,894,326 - PS417_27320 0.41 -2.3 5,894,326 - PS417_27320 0.41 -0.1 5,894,326 - PS417_27320 0.41 +0.4 5,894,419 + PS417_27320 0.50 +1.2 5,894,573 - PS417_27320 0.66 -0.4 5,894,601 + PS417_27320 0.69 +0.2 5,894,601 + PS417_27320 0.69 +0.3 5,894,602 - PS417_27320 0.69 -1.8 5,894,716 + PS417_27320 0.81 +0.7
Or see this region's nucleotide sequence